Variant report

Variant	rs34833309
Chromosome Location	chr10:97639241-97639242
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11592937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11594010	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11594340	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11594853	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11595122	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11596697	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11597564	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11599779	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12761960	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12763743	0.86[EUR][1000 genomes]
rs12767650	0.81[EUR][1000 genomes]
rs12770313	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12770849	0.83[EUR][1000 genomes]
rs12774334	0.84[EUR][1000 genomes]
rs12780375	0.87[EUR][1000 genomes]
rs12782273	0.86[EUR][1000 genomes]
rs3176886	0.89[EUR][1000 genomes]
rs3176888	0.87[EUR][1000 genomes]
rs3181115	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34296389	0.85[EUR][1000 genomes]
rs34332904	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34630379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34808745	0.89[AMR][1000 genomes]
rs34836127	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34955155	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34963139	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35051706	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35691144	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35700869	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35968758	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35987262	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36103691	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57670810	0.82[AMR][1000 genomes]
rs66527979	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66706740	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66751616	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs68078796	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71482374	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71482376	0.83[EUR][1000 genomes]
rs71482377	0.83[EUR][1000 genomes]
rs71482378	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97601800-97647800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:97602400-97655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:97619600-97655000	Weak transcription	HUVEC	blood vessel
4	chr10:97621000-97640600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:97621000-97666800	Weak transcription	Gastric	stomach
6	chr10:97622800-97666600	Weak transcription	Thymus	Thymus
7	chr10:97623800-97666600	Weak transcription	Right Ventricle	heart
8	chr10:97625200-97655200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:97625400-97648600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:97625400-97649200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:97625400-97666400	Weak transcription	Osteobl	bone
12	chr10:97626400-97666400	Weak transcription	Pancreas	Pancrea
13	chr10:97626800-97639600	Weak transcription	HepG2	liver
14	chr10:97626800-97654200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr10:97628000-97666800	Weak transcription	Esophagus	oesophagus
16	chr10:97628200-97647800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:97628200-97655600	Weak transcription	Brain Anterior Caudate	brain
18	chr10:97628400-97657600	Weak transcription	Hela-S3	cervix
19	chr10:97629200-97647800	Weak transcription	NHEK	skin
20	chr10:97629200-97655200	Weak transcription	NH-A	brain
21	chr10:97629200-97663000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:97631200-97663000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:97632200-97660400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:97632200-97667000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:97633200-97655600	Weak transcription	Psoas Muscle	Psoas
26	chr10:97633200-97655800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr10:97633400-97648000	Weak transcription	Aorta	Aorta
28	chr10:97633400-97655200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:97633400-97655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:97633400-97656000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:97633400-97659800	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:97633400-97666600	Weak transcription	Brain Angular Gyrus	brain
33	chr10:97633600-97649800	Weak transcription	Adipose Nuclei	Adipose
34	chr10:97633800-97639800	Weak transcription	A549	lung
35	chr10:97633800-97649200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:97633800-97649800	Weak transcription	Left Ventricle	heart
37	chr10:97633800-97666600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:97633800-97666600	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:97634000-97663200	Weak transcription	Spleen	Spleen
40	chr10:97634400-97641800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr10:97634400-97655200	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:97634400-97655200	Weak transcription	Placenta	Placenta
43	chr10:97634400-97655600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr10:97634400-97659800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:97634400-97666800	Weak transcription	Lung	lung
46	chr10:97634600-97640400	Weak transcription	Ovary	ovary
47	chr10:97634600-97648400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:97634600-97655400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:97634600-97666400	Weak transcription	Brain Germinal Matrix	brain
50	chr10:97634600-97666800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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