Variant report

Variant	rs34836127
Chromosome Location	chr10:97526946-97526947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11592789	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11592937	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11593038	0.82[EUR][1000 genomes]
rs11594340	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11594687	0.89[AMR][1000 genomes]
rs11595122	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11595248	0.80[EUR][1000 genomes]
rs11598540	0.82[EUR][1000 genomes]
rs12761960	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12763743	0.82[EUR][1000 genomes]
rs12765494	0.86[AMR][1000 genomes]
rs12767650	0.89[EUR][1000 genomes]
rs12770313	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12770849	0.87[EUR][1000 genomes]
rs12774334	0.84[EUR][1000 genomes]
rs12775780	0.82[EUR][1000 genomes]
rs12779833	0.81[EUR][1000 genomes]
rs12780375	0.83[EUR][1000 genomes]
rs12782273	0.82[EUR][1000 genomes]
rs3176886	0.80[EUR][1000 genomes]
rs3176888	0.83[EUR][1000 genomes]
rs3181115	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34296389	0.85[EUR][1000 genomes]
rs34332904	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34460407	0.89[AMR][1000 genomes]
rs34630379	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34808745	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34833309	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35051706	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35691144	0.82[EUR][1000 genomes]
rs35700869	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35822210	0.83[AMR][1000 genomes]
rs35987262	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57670810	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66751616	0.82[EUR][1000 genomes]
rs67783179	0.89[AMR][1000 genomes]
rs67857430	0.89[AMR][1000 genomes]
rs68078796	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71482367	0.81[EUR][1000 genomes]
rs71482374	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71482376	0.87[EUR][1000 genomes]
rs71482377	0.87[EUR][1000 genomes]
rs71482378	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97518600-97534000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:97518800-97534000	Weak transcription	Fetal Stomach	stomach
3	chr10:97520000-97527600	Weak transcription	Small Intestine	intestine
4	chr10:97521800-97527600	Weak transcription	Aorta	Aorta
5	chr10:97521800-97537400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr10:97521800-97537400	Weak transcription	Lung	lung
7	chr10:97522200-97528000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:97523000-97527600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:97523000-97527600	Weak transcription	HUVEC	blood vessel
10	chr10:97526000-97533400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:97526400-97529400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
12	chr10:97526600-97527400	Enhancers	Primary B cells from cord blood	blood
13	chr10:97526600-97529200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:97526600-97529200	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:97526800-97527400	Enhancers	Monocytes-CD14+_RO01746	blood

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