Variant report

Variant	rs34460407
Chromosome Location	chr10:97325775-97325776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:97325660-97325810	HVMF	connective:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97321491..97323159-chr10:97323965..97326308,2	K562	blood:
2	chr10:97249016..97250688-chr10:97324094..97327075,2	MCF-7	breast:

Variant related genes	Relation type
SORBS1	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11592789	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11592809	0.81[EUR][1000 genomes]
rs11593693	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11594687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11595122	0.93[AMR][1000 genomes]
rs12761112	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12761960	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12765494	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12770313	0.93[AMR][1000 genomes]
rs12781327	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1409710	0.81[EUR][1000 genomes]
rs2275272	0.81[EUR][1000 genomes]
rs2296690	0.81[EUR][1000 genomes]
rs34332904	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34533159	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34772783	0.88[EUR][1000 genomes]
rs34808745	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34836127	0.89[AMR][1000 genomes]
rs34847853	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35051706	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35700869	0.93[AMR][1000 genomes]
rs35822210	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35987262	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs3793751	0.81[EUR][1000 genomes]
rs57670810	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67783179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67857430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68078796	0.89[AMR][1000 genomes]
rs71482367	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71482374	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv524227	chr10:97324127-97328227	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97321600-97327400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:97321600-97327600	Weak transcription	Right Atrium	heart
3	chr10:97321600-97328000	Weak transcription	Lung	lung
4	chr10:97321600-97329200	Enhancers	Placenta	Placenta
5	chr10:97321600-97332200	Weak transcription	Right Ventricle	heart
6	chr10:97321800-97325800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:97321800-97327800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:97321800-97331800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:97321800-97332200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:97322000-97327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:97322400-97328200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:97322400-97328200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:97323000-97328000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:97324600-97326200	Enhancers	Fetal Lung	lung
15	chr10:97324600-97326200	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:97324600-97326400	Enhancers	Fetal Stomach	stomach
17	chr10:97324800-97326600	Enhancers	Colon Smooth Muscle	Colon
18	chr10:97325000-97326600	Enhancers	HepG2	liver
19	chr10:97325400-97325800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:97325400-97326200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:97325400-97326200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr10:97325600-97325800	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr10:97325600-97326200	Enhancers	Brain Cingulate Gyrus	brain
24	chr10:97325600-97326200	Enhancers	Hela-S3	cervix
25	chr10:97325600-97326400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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