Variant report

Variant	rs71482374
Chromosome Location	chr10:97518592-97518593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97514306..97516090-chr10:97518536..97520817,2	K562	blood:
2	chr10:97509445..97513285-chr10:97516260..97519488,4	K562	blood:

Variant related genes	Relation type
ENSG00000138185	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11592789	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11592937	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11593038	0.84[EUR][1000 genomes]
rs11594010	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11594340	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11594687	0.93[AMR][1000 genomes]
rs11594853	0.87[AFR][1000 genomes]
rs11595122	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11595248	0.83[EUR][1000 genomes]
rs11597564	0.87[AFR][1000 genomes]
rs11598540	0.84[EUR][1000 genomes]
rs11599779	0.87[AFR][1000 genomes]
rs12761960	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12763743	0.84[EUR][1000 genomes]
rs12765494	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12767650	0.91[EUR][1000 genomes]
rs12770313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12770849	0.89[EUR][1000 genomes]
rs12774334	0.86[EUR][1000 genomes]
rs12775780	0.84[EUR][1000 genomes]
rs12779833	0.83[EUR][1000 genomes]
rs12780375	0.85[EUR][1000 genomes]
rs12782273	0.84[EUR][1000 genomes]
rs3176886	0.83[EUR][1000 genomes]
rs3176888	0.85[EUR][1000 genomes]
rs3181115	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34296389	0.87[EUR][1000 genomes]
rs34332904	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34460407	0.93[AMR][1000 genomes]
rs34630379	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34808745	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34833309	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34836127	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34955155	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs34963139	0.87[AFR][1000 genomes]
rs35051706	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35691144	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35700869	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35822210	0.86[AMR][1000 genomes]
rs35968758	0.87[AFR][1000 genomes]
rs35987262	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36103691	0.87[AFR][1000 genomes]
rs57670810	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66527979	0.87[AFR][1000 genomes]
rs66706740	0.87[AFR][1000 genomes]
rs66751616	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs67783179	0.93[AMR][1000 genomes]
rs67857430	0.93[AMR][1000 genomes]
rs68078796	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71482367	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71482376	0.89[EUR][1000 genomes]
rs71482377	0.89[EUR][1000 genomes]
rs71482378	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97515200-97518600	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr10:97516000-97519000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr10:97516000-97519200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:97516400-97518600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:97516600-97521400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:97516800-97521200	Weak transcription	Left Ventricle	heart
7	chr10:97516800-97524800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:97517000-97519000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:97517200-97518800	Weak transcription	Aorta	Aorta
10	chr10:97517200-97519400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:97517200-97520200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:97517200-97521200	Weak transcription	Primary T cells from cord blood	blood
13	chr10:97517200-97521400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:97517400-97518600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:97517400-97519200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:97517400-97519800	Enhancers	Colon Smooth Muscle	Colon
17	chr10:97517400-97520000	Weak transcription	Brain Anterior Caudate	brain
18	chr10:97517600-97523000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:97517600-97523600	Enhancers	Primary B cells from peripheral blood	blood
20	chr10:97517800-97518800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr10:97517800-97519000	Flanking Active TSS	Rectal Smooth Muscle	rectum
22	chr10:97518000-97518600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr10:97518000-97518800	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr10:97518000-97519200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:97518000-97519600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr10:97518000-97519800	Enhancers	HUVEC	blood vessel
27	chr10:97518200-97518600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr10:97518200-97518600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:97518200-97518600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr10:97518200-97518600	Enhancers	Small Intestine	intestine
31	chr10:97518200-97518800	Enhancers	Adipose Nuclei	Adipose
32	chr10:97518200-97519200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr10:97518200-97519200	Enhancers	K562	blood
34	chr10:97518200-97519400	Enhancers	Brain Substantia Nigra	brain
35	chr10:97518200-97519400	Flanking Active TSS	GM12878-XiMat	blood
36	chr10:97518200-97519800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr10:97518400-97518600	Enhancers	H1 Cell Line	embryonic stem cell
38	chr10:97518400-97518600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:97518400-97518600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:97518400-97518600	Enhancers	Muscle Satellite Cultured Cells	--
41	chr10:97518400-97518600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:97518400-97518600	Enhancers	Brain Cingulate Gyrus	brain
43	chr10:97518400-97518600	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr10:97518400-97518600	Enhancers	Colonic Mucosa	Colon
45	chr10:97518400-97518600	Enhancers	Placenta	Placenta
46	chr10:97518400-97518600	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:97518400-97518800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:97518400-97518800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:97518400-97518800	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr10:97518400-97518800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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