Variant report

Variant	rs35700869
Chromosome Location	chr10:97531724-97531725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11592789	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11592809	0.89[CEU][hapmap];0.95[TSI][hapmap]
rs11592937	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11593038	0.82[EUR][1000 genomes]
rs11594010	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11594340	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11594687	0.93[AMR][1000 genomes]
rs11594853	1.00[AFR][1000 genomes]
rs11595122	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11595248	1.00[CEU][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs11596697	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11597564	1.00[AFR][1000 genomes]
rs11598540	0.82[EUR][1000 genomes]
rs11599779	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12761960	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12763743	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs12765494	0.89[AMR][1000 genomes]
rs12767650	0.89[CEU][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs12770313	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12770849	0.89[CEU][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs12774334	0.88[EUR][1000 genomes]
rs12775780	0.82[EUR][1000 genomes]
rs12779833	0.81[EUR][1000 genomes]
rs12780375	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12782273	0.86[EUR][1000 genomes]
rs1409710	1.00[CEU][hapmap]
rs2275272	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs3176886	0.89[CEU][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs3176888	0.89[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs3181115	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34296389	0.89[EUR][1000 genomes]
rs34332904	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34460407	0.93[AMR][1000 genomes]
rs34630379	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34808745	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34833309	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34836127	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34955155	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34963139	1.00[AFR][1000 genomes]
rs35051706	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35691144	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35822210	0.86[AMR][1000 genomes]
rs35968758	1.00[AFR][1000 genomes]
rs35987262	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36103691	1.00[AFR][1000 genomes]
rs3793751	1.00[CEU][hapmap]
rs57670810	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66527979	1.00[AFR][1000 genomes]
rs66706740	1.00[AFR][1000 genomes]
rs66751616	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs67783179	0.93[AMR][1000 genomes]
rs67857430	0.93[AMR][1000 genomes]
rs68078796	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71482367	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71482374	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71482376	0.91[EUR][1000 genomes]
rs71482377	0.91[EUR][1000 genomes]
rs71482378	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35700869	CPEB3	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97518600-97534000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:97518800-97534000	Weak transcription	Fetal Stomach	stomach
3	chr10:97521800-97537400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:97521800-97537400	Weak transcription	Lung	lung
5	chr10:97526000-97533400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:97527800-97537400	Weak transcription	Aorta	Aorta
7	chr10:97529000-97544200	Weak transcription	Spleen	Spleen
8	chr10:97529400-97533400	ZNF genes & repeats	GM12878-XiMat	blood
9	chr10:97530600-97532000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr10:97531400-97537600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:97531600-97532000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr10:97531600-97532600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:97531600-97541400	Weak transcription	Primary B cells from cord blood	blood

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