Variant report

Variant	rs12765494
Chromosome Location	chr10:97365349-97365350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97129620..97132009-chr10:97364748..97367399,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11592789	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11592809	0.88[EUR][1000 genomes]
rs11593693	0.81[EUR][1000 genomes]
rs11594340	0.86[AMR][1000 genomes]
rs11594687	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11595122	0.89[AMR][1000 genomes]
rs12761112	0.82[EUR][1000 genomes]
rs12761960	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12770313	0.89[AMR][1000 genomes]
rs1409710	0.88[EUR][1000 genomes]
rs2275272	0.87[EUR][1000 genomes]
rs2296690	0.88[EUR][1000 genomes]
rs34332904	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34460407	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34533159	0.81[EUR][1000 genomes]
rs34772783	0.81[EUR][1000 genomes]
rs34808745	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34832675	0.85[EUR][1000 genomes]
rs34836127	0.86[AMR][1000 genomes]
rs34847853	0.81[EUR][1000 genomes]
rs35051706	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35700869	0.89[AMR][1000 genomes]
rs35712039	0.85[EUR][1000 genomes]
rs35822210	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35987262	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3793751	0.87[EUR][1000 genomes]
rs57670810	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67783179	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67857430	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs68078796	0.86[AMR][1000 genomes]
rs71482367	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71482374	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97360800-97366200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:97361000-97366000	Weak transcription	Hela-S3	cervix
4	chr10:97361000-97366400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:97361000-97366800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:97361000-97367600	Weak transcription	Fetal Kidney	kidney
7	chr10:97361000-97368200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:97361000-97368400	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:97361400-97365800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:97361400-97366600	Weak transcription	K562	blood
11	chr10:97361600-97367800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:97361800-97369200	Weak transcription	Primary B cells from cord blood	blood
13	chr10:97362400-97365400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr10:97362600-97365400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr10:97363000-97365600	Weak transcription	A549	lung
16	chr10:97363000-97366000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr10:97363000-97366800	Weak transcription	HSMM	muscle
18	chr10:97363200-97365400	Enhancers	HSMMtube	muscle
19	chr10:97363200-97365600	Genic enhancers	Fetal Muscle Leg	muscle
20	chr10:97363200-97366400	Weak transcription	HUVEC	blood vessel
21	chr10:97363200-97369000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:97363400-97366600	Weak transcription	Colonic Mucosa	Colon
23	chr10:97363400-97370400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr10:97363400-97370400	Strong transcription	Fetal Intestine Small	intestine
25	chr10:97363600-97365400	Weak transcription	NHEK	skin
26	chr10:97363600-97369200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:97363800-97365400	Weak transcription	Fetal Thymus	thymus
28	chr10:97363800-97367600	Enhancers	Colon Smooth Muscle	Colon
29	chr10:97363800-97368400	Weak transcription	Brain Substantia Nigra	brain
30	chr10:97363800-97369200	Weak transcription	HMEC	breast
31	chr10:97363800-97369800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr10:97364000-97365600	Enhancers	Aorta	Aorta
33	chr10:97364000-97365600	Enhancers	Left Ventricle	heart
34	chr10:97364000-97365600	Enhancers	Right Atrium	heart
35	chr10:97364000-97365800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:97364000-97366600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr10:97364000-97367400	Enhancers	Rectal Smooth Muscle	rectum
38	chr10:97364000-97370200	Strong transcription	Small Intestine	intestine
39	chr10:97364000-97382000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:97364000-97409200	Strong transcription	Primary T cells from cord blood	blood
41	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:97364200-97365400	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr10:97364200-97366000	Enhancers	Fetal Heart	heart
44	chr10:97364200-97367000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:97364200-97372000	Strong transcription	Fetal Intestine Large	intestine
46	chr10:97364400-97365400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr10:97364400-97365600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:97364400-97365800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:97364400-97366600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:97364400-97367200	Genic enhancers	Fetal Stomach	stomach

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