Variant report

Variant	rs12761112
Chromosome Location	chr10:97348958-97348959
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11592789	0.88[CEU][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11592809	1.00[CHB][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11593038	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11593693	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11594687	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11595122	0.88[CEU][hapmap]
rs11595248	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11598540	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12354465	1.00[CHB][hapmap]
rs12357513	1.00[CHB][hapmap]
rs12359410	1.00[CHB][hapmap]
rs12761960	0.88[CEU][hapmap]
rs12765494	0.82[EUR][1000 genomes]
rs12767650	1.00[CHB][hapmap];0.86[AMR][1000 genomes]
rs12770313	0.88[CEU][hapmap]
rs12770849	0.86[AMR][1000 genomes]
rs12774334	0.81[AMR][1000 genomes]
rs12775780	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12779833	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12781327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12782273	0.81[AMR][1000 genomes]
rs1409710	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2275272	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2296690	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3176888	0.86[AMR][1000 genomes]
rs34296389	0.86[AMR][1000 genomes]
rs34332904	0.81[AMR][1000 genomes]
rs34460407	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34533159	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34832675	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34847853	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35700869	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs35712039	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35822210	0.86[EUR][1000 genomes]
rs3793746	1.00[CHB][hapmap]
rs3793751	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs493193	0.91[LWK][hapmap]
rs533383	0.91[LWK][hapmap]
rs568046	0.91[LWK][hapmap]
rs57670810	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67783179	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67857430	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7073937	1.00[CHB][hapmap]
rs71482367	0.82[AMR][1000 genomes]
rs71482376	0.86[AMR][1000 genomes]
rs71482377	0.86[AMR][1000 genomes]
rs71482378	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12761112	SFRP5	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97339600-97351400	Weak transcription	Placenta	Placenta

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