Variant report

Variant	rs12354465
Chromosome Location	chr10:97333458-97333459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97320460..97323446-chr10:97332611..97334793,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11188367	1.00[EUR][1000 genomes]
rs11188378	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188382	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188383	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188388	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188391	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11188405	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188410	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188412	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188413	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188415	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188419	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188424	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188431	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188448	0.80[EUR][1000 genomes]
rs11188450	0.80[EUR][1000 genomes]
rs11188451	0.80[EUR][1000 genomes]
rs11188461	0.85[EUR][1000 genomes]
rs11188466	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs11188467	0.80[EUR][1000 genomes]
rs11188469	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs11188475	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs11553577	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs11592809	1.00[CHB][hapmap]
rs11595248	1.00[CHB][hapmap]
rs12357211	0.85[EUR][1000 genomes]
rs12357513	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358517	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12359410	1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];0.86[ASN][1000 genomes]
rs12360095	0.86[ASN][1000 genomes]
rs12767650	1.00[CHB][hapmap]
rs1409710	1.00[CHB][hapmap]
rs2275272	1.00[CHB][hapmap]
rs3793746	1.00[CHB][hapmap]
rs3793751	1.00[CHB][hapmap]
rs3818833	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41291576	0.80[EUR][1000 genomes]
rs56747025	0.80[EUR][1000 genomes]
rs58059905	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61587319	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61736814	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7073937	1.00[CHB][hapmap]
rs7090630	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs73329287	0.80[EUR][1000 genomes]
rs73331134	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97332000-97333600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:97332000-97334200	Enhancers	HSMMtube	muscle
3	chr10:97332600-97333600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:97332600-97333800	Enhancers	Fetal Lung	lung
5	chr10:97332600-97334200	Weak transcription	Right Atrium	heart
6	chr10:97332600-97334800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:97332600-97335200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:97332600-97335400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:97332600-97335400	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:97333000-97335200	Enhancers	Psoas Muscle	Psoas
11	chr10:97333200-97334200	Bivalent Enhancer	HepG2	liver
12	chr10:97333200-97334800	Enhancers	Left Ventricle	heart
13	chr10:97333200-97336000	Enhancers	Fetal Heart	heart
14	chr10:97333400-97333600	Enhancers	Brain Anterior Caudate	brain
15	chr10:97333400-97335200	Enhancers	Right Ventricle	heart

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