Variant report

Variant	rs11188405
Chromosome Location	chr10:97383358-97383359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11188367	0.85[EUR][1000 genomes]
rs11188378	0.80[EUR][1000 genomes]
rs11188382	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188383	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188388	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188391	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188412	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188413	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188415	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188419	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188424	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188431	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11188448	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188450	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188451	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188461	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188466	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11188467	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11188469	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11188475	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11188479	0.84[AMR][1000 genomes]
rs11188481	0.84[AMR][1000 genomes]
rs11188491	0.84[AMR][1000 genomes]
rs11553577	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12354465	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12357211	0.85[EUR][1000 genomes]
rs12357513	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12358517	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3818833	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41291576	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4420188	0.84[AMR][1000 genomes]
rs56747025	0.81[EUR][1000 genomes]
rs58059905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61587319	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61736814	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7070507	0.84[AMR][1000 genomes]
rs7090630	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73329287	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73331134	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97364000-97409200	Strong transcription	Primary T cells from cord blood	blood
2	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:97364400-97403200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:97364600-97388400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:97364800-97403400	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr10:97364800-97411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97365000-97403000	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:97365000-97403400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:97365800-97385000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:97367400-97388600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:97367600-97388400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:97368400-97393000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:97373800-97386600	Weak transcription	Fetal Brain Male	brain
14	chr10:97374000-97386400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:97374400-97386600	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr10:97375400-97387000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:97376200-97384400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:97376200-97400600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:97376400-97411400	Weak transcription	Psoas Muscle	Psoas
20	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:97376600-97384800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:97376600-97385800	Weak transcription	Fetal Kidney	kidney
23	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr10:97377400-97383400	Weak transcription	Small Intestine	intestine
25	chr10:97377800-97384600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr10:97378000-97384000	Weak transcription	Colonic Mucosa	Colon
27	chr10:97378000-97384600	Weak transcription	Right Ventricle	heart
28	chr10:97378200-97385200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:97378200-97386400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:97378200-97387200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr10:97378200-97391800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:97378600-97383600	Weak transcription	Aorta	Aorta
33	chr10:97378600-97384000	Weak transcription	Brain Anterior Caudate	brain
34	chr10:97378600-97384000	Weak transcription	Brain Germinal Matrix	brain
35	chr10:97378600-97384000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:97378600-97384400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr10:97378600-97384600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:97378600-97384600	Weak transcription	Left Ventricle	heart
39	chr10:97378600-97385800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:97378600-97386400	Weak transcription	Spleen	Spleen
41	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
42	chr10:97378800-97383800	Weak transcription	Primary B cells from cord blood	blood
43	chr10:97378800-97383800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr10:97378800-97384000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:97378800-97384000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr10:97378800-97384000	Weak transcription	Adipose Nuclei	Adipose
47	chr10:97378800-97384000	Weak transcription	HMEC	breast
48	chr10:97378800-97384000	Weak transcription	HSMM	muscle
49	chr10:97378800-97384000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr10:97378800-97384000	Weak transcription	NHDF-Ad	bronchial

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