Variant report

Variant	rs12358517
Chromosome Location	chr10:97448401-97448402
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97446799..97448496-chr10:97451292..97453225,2	K562	blood:
2	chr10:97442626..97444965-chr10:97447681..97450391,2	K562	blood:
3	chr10:97444989..97451306-chr10:97451745..97454944,9	MCF-7	breast:
4	chr10:97448194..97449375-chr10:97601411..97602625,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119977	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11188367	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs11188382	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188383	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188388	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188391	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188405	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188413	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188423	0.88[JPT][hapmap]
rs11188424	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188433	0.88[JPT][hapmap]
rs11188448	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188450	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188451	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188461	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188467	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188479	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188481	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188491	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188502	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188508	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11553577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354465	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12355114	0.84[AMR][1000 genomes]
rs12357211	0.92[EUR][1000 genomes]
rs12357513	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12784530	0.88[JPT][hapmap]
rs2275760	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2282305	0.88[JPT][hapmap]
rs3176882	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs3181121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3818833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41291576	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4420188	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56747025	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58059905	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58169787	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60144080	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61587319	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61731067	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61736814	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7070507	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7073937	1.00[JPT][hapmap]
rs7090630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7093453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7100644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73315224	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73329287	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73331134	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73333021	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7893577	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97423000-97452000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:97427800-97452600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:97431800-97450600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:97431800-97451200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:97432000-97450800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:97432800-97452000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:97433000-97451800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:97433400-97451400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:97433800-97452600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:97434000-97452000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:97434200-97452000	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:97434400-97450600	Strong transcription	Dnd41	blood
13	chr10:97434400-97451000	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr10:97434400-97451600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:97434400-97452200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:97434600-97450400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:97434600-97450800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:97434600-97451000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr10:97434600-97451600	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:97434800-97451800	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:97434800-97451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:97435000-97451200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr10:97435000-97452000	Strong transcription	Placenta	Placenta
24	chr10:97435600-97451000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr10:97435600-97451600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:97435800-97449200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:97436000-97449400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:97436200-97452000	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:97436200-97452200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr10:97436400-97451800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:97436600-97450200	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:97437000-97448600	Strong transcription	Fetal Intestine Large	intestine
33	chr10:97437200-97451400	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr10:97437200-97451800	Strong transcription	Primary T cells from cord blood	blood
35	chr10:97437200-97452400	Strong transcription	Ovary	ovary
36	chr10:97437400-97450600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:97437400-97451600	Strong transcription	Duodenum Mucosa	Duodenum
38	chr10:97437400-97451800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:97437400-97452000	Strong transcription	Fetal Muscle Trunk	muscle
40	chr10:97437400-97452200	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr10:97438600-97451600	Strong transcription	Stomach Smooth Muscle	stomach
42	chr10:97438800-97449800	Strong transcription	Primary B cells from cord blood	blood
43	chr10:97438800-97452000	Strong transcription	Osteobl	bone
44	chr10:97439000-97449800	Strong transcription	HUVEC	blood vessel
45	chr10:97439600-97451200	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:97439600-97452400	Strong transcription	Fetal Muscle Leg	muscle
47	chr10:97439800-97451600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:97440200-97449400	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr10:97440400-97452600	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr10:97440800-97451600	Strong transcription	Fetal Lung	lung

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