Variant report

Variant	rs2275760
Chromosome Location	chr10:97624840-97624841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97453632..97454306-chr10:97624802..97625364,3	MCF-7	breast:
2	chr10:97450953..97453263-chr10:97623581..97625126,2	K562	blood:
3	chr10:97452292..97454574-chr10:97624545..97626669,2	MCF-7	breast:
4	chr10:97453637..97454360-chr10:97624736..97625618,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119977	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11188419	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188423	0.85[JPT][hapmap]
rs11188424	0.83[EUR][1000 genomes]
rs11188431	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188433	0.85[JPT][hapmap]
rs11188448	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188450	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188451	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188461	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11188466	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188467	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188469	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188475	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188479	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188481	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188491	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188502	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188508	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11553577	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs12355114	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12357211	0.80[EUR][1000 genomes]
rs12358517	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12784530	0.85[JPT][hapmap]
rs3176882	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181121	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818833	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41291576	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4420188	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4512762	0.87[ASN][1000 genomes]
rs56747025	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57456033	0.90[AMR][1000 genomes]
rs58169787	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59502315	0.93[ASN][1000 genomes]
rs60144080	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61503377	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61731067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070507	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073937	1.00[JPT][hapmap]
rs7090630	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7093453	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100644	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315254	0.93[ASN][1000 genomes]
rs73315260	0.97[ASN][1000 genomes]
rs73315285	0.87[ASN][1000 genomes]
rs73317145	0.87[ASN][1000 genomes]
rs73329287	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73331134	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73333021	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898422	0.97[ASN][1000 genomes]
rs7913155	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97592600-97632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:97597200-97627200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:97597400-97627400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:97600600-97628600	Weak transcription	Colonic Mucosa	Colon
5	chr10:97601600-97635600	Weak transcription	Fetal Brain Male	brain
6	chr10:97601800-97626000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:97601800-97626400	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:97601800-97627200	Weak transcription	Liver	Liver
9	chr10:97601800-97635400	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97601800-97647800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:97602400-97655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:97609600-97627400	Weak transcription	Brain Anterior Caudate	brain
13	chr10:97610000-97627200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:97610600-97626000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:97615400-97634400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr10:97615800-97633800	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:97615800-97634400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:97618000-97631200	Weak transcription	Psoas Muscle	Psoas
19	chr10:97618400-97626600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:97619000-97631000	Weak transcription	Adipose Nuclei	Adipose
21	chr10:97619400-97633000	Weak transcription	Fetal Brain Female	brain
22	chr10:97619600-97655000	Weak transcription	HUVEC	blood vessel
23	chr10:97619800-97633400	Weak transcription	A549	lung
24	chr10:97620000-97626400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:97620200-97625200	Strong transcription	Fetal Stomach	stomach
26	chr10:97620800-97626600	Weak transcription	Esophagus	oesophagus
27	chr10:97620800-97633000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:97621000-97625800	Weak transcription	Left Ventricle	heart
29	chr10:97621000-97628600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:97621000-97640600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:97621000-97666800	Weak transcription	Gastric	stomach
32	chr10:97621200-97627200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:97622200-97631800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:97622400-97626600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:97622400-97632000	Weak transcription	Lung	lung
36	chr10:97622600-97626000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr10:97622800-97625200	Genic enhancers	GM12878-XiMat	blood
38	chr10:97622800-97631600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr10:97622800-97666600	Weak transcription	Thymus	Thymus
40	chr10:97623200-97625800	Weak transcription	Aorta	Aorta
41	chr10:97623200-97626000	Weak transcription	Fetal Muscle Leg	muscle
42	chr10:97623600-97625200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:97623800-97625000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:97623800-97625400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:97623800-97666600	Weak transcription	Right Ventricle	heart
46	chr10:97624000-97625400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr10:97624200-97631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:97624400-97625000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:97624400-97625600	Genic enhancers	Primary B cells from peripheral blood	blood
50	chr10:97624600-97625000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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