Variant report

Variant	rs61503377
Chromosome Location	chr10:97569492-97569493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11188479	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188481	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188491	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188502	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11188508	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12355114	0.85[AMR][1000 genomes]
rs2275760	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3176882	0.85[AMR][1000 genomes]
rs3181121	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4420188	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58169787	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60144080	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61731067	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7070507	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7093453	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7100644	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73315224	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73333021	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97553000-97576200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:97558800-97570600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:97567200-97573200	Weak transcription	Spleen	Spleen
4	chr10:97567200-97573800	Weak transcription	Primary B cells from cord blood	blood
5	chr10:97567400-97573600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:97567800-97570000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:97568600-97569800	Weak transcription	GM12878-XiMat	blood
8	chr10:97569200-97570000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr10:97569200-97570000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:97569200-97570200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
11	chr10:97569200-97572000	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links