Variant report

Variant	rs4420188
Chromosome Location	chr10:97532228-97532229
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11188388	0.81[AMR][1000 genomes]
rs11188391	0.84[AMR][1000 genomes]
rs11188405	0.84[AMR][1000 genomes]
rs11188410	0.84[AMR][1000 genomes]
rs11188412	0.81[AMR][1000 genomes]
rs11188413	0.84[AMR][1000 genomes]
rs11188415	0.84[AMR][1000 genomes]
rs11188419	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188424	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188431	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188448	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188450	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188451	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188461	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188466	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188467	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188469	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188475	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188502	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188508	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11553577	0.81[EUR][1000 genomes]
rs12355114	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12357211	0.80[EUR][1000 genomes]
rs12358517	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2275760	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3176882	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3181121	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3818833	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41291576	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56747025	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57456033	0.84[AMR][1000 genomes]
rs58059905	0.84[AMR][1000 genomes]
rs58169787	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59502315	0.81[ASN][1000 genomes]
rs60144080	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61503377	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61587319	0.84[AMR][1000 genomes]
rs61731067	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7070507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7090630	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7093453	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7100644	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73315224	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73315254	0.81[ASN][1000 genomes]
rs73315260	0.84[ASN][1000 genomes]
rs73329287	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73331134	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73333021	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7898422	0.84[ASN][1000 genomes]
rs7913155	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97518600-97534000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:97518800-97534000	Weak transcription	Fetal Stomach	stomach
3	chr10:97521800-97537400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:97521800-97537400	Weak transcription	Lung	lung
5	chr10:97526000-97533400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:97527800-97537400	Weak transcription	Aorta	Aorta
7	chr10:97529000-97544200	Weak transcription	Spleen	Spleen
8	chr10:97529400-97533400	ZNF genes & repeats	GM12878-XiMat	blood
9	chr10:97531400-97537600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:97531600-97532600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr10:97531600-97541400	Weak transcription	Primary B cells from cord blood	blood
12	chr10:97532000-97532800	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:97532000-97533000	Strong transcription	Primary monocytes fromperipheralblood	blood

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