Variant report

Variant	rs11188415
Chromosome Location	chr10:97408776-97408777
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97408175..97410101-chr10:97411776..97414695,3	MCF-7	breast:
2	chr10:97408476..97410603-chr10:97424480..97427139,2	K562	blood:
3	chr10:97401313..97403969-chr10:97407292..97409828,2	K562	blood:
4	chr10:97408761..97411732-chr10:97414860..97417411,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000059573	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11188367	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs11188378	0.83[EUR][1000 genomes]
rs11188382	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188383	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188388	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11188391	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11188405	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188423	0.88[JPT][hapmap]
rs11188424	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188433	0.88[JPT][hapmap]
rs11188448	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188450	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188451	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188461	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188467	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11188479	0.84[AMR][1000 genomes]
rs11188481	0.84[AMR][1000 genomes]
rs11188491	0.84[AMR][1000 genomes]
rs11188502	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11553577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12354465	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12357211	0.87[EUR][1000 genomes]
rs12357513	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12358517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12784530	0.88[JPT][hapmap]
rs2282305	0.88[JPT][hapmap]
rs3818833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41291576	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4420188	0.84[AMR][1000 genomes]
rs56747025	0.83[EUR][1000 genomes]
rs58059905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61587319	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61736814	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7070507	0.84[AMR][1000 genomes]
rs7073937	1.00[JPT][hapmap]
rs7090630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7093453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73329287	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73331134	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7893577	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97364000-97409200	Strong transcription	Primary T cells from cord blood	blood
2	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:97364800-97411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:97376400-97411400	Weak transcription	Psoas Muscle	Psoas
5	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
8	chr10:97380200-97408800	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:97380800-97409000	Strong transcription	Osteobl	bone
10	chr10:97383000-97411200	Strong transcription	Placenta	Placenta
11	chr10:97383800-97409400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:97383800-97410200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:97386600-97411000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:97388800-97411000	Weak transcription	Fetal Brain Male	brain
15	chr10:97389600-97413200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:97389800-97413200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:97390000-97411200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr10:97394400-97411400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr10:97399800-97413600	Strong transcription	Dnd41	blood
20	chr10:97400000-97412600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:97400800-97411200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:97401000-97415200	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:97401200-97411000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr10:97401800-97409200	Strong transcription	Primary B cells from cord blood	blood
25	chr10:97402200-97415200	Weak transcription	Right Ventricle	heart
26	chr10:97402600-97410000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:97402600-97411000	Weak transcription	Thymus	Thymus
28	chr10:97402800-97410000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr10:97402800-97410800	Weak transcription	Brain Substantia Nigra	brain
30	chr10:97402800-97411000	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:97402800-97411000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:97402800-97415200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:97403000-97410800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:97403000-97410800	Weak transcription	Fetal Kidney	kidney
35	chr10:97403000-97411000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:97403000-97411000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:97403000-97411200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:97403000-97411200	Weak transcription	Left Ventricle	heart
39	chr10:97403000-97414400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:97403000-97415400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:97403200-97409600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr10:97404000-97409200	Strong transcription	GM12878-XiMat	blood
43	chr10:97404000-97410400	Genic enhancers	Fetal Intestine Small	intestine
44	chr10:97404000-97411200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:97404000-97413800	Strong transcription	Fetal Muscle Leg	muscle
46	chr10:97404200-97409000	Genic enhancers	HepG2	liver
47	chr10:97404200-97410000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:97404200-97410600	Genic enhancers	Fetal Intestine Large	intestine
49	chr10:97404200-97411400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:97404200-97412600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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