Variant report

Variant	rs11188461
Chromosome Location	chr10:97495608-97495609
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11188367	0.85[EUR][1000 genomes]
rs11188378	0.80[EUR][1000 genomes]
rs11188382	0.85[EUR][1000 genomes]
rs11188383	0.85[EUR][1000 genomes]
rs11188388	0.85[EUR][1000 genomes]
rs11188391	0.80[EUR][1000 genomes]
rs11188405	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188410	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188412	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188413	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188415	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188419	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188424	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188431	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188448	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188450	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188451	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188466	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188467	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188469	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188475	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188479	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188481	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188491	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11188502	0.90[EUR][1000 genomes]
rs11188508	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11553577	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12354465	0.85[EUR][1000 genomes]
rs12355114	0.83[EUR][1000 genomes]
rs12357211	0.90[EUR][1000 genomes]
rs12357513	0.85[EUR][1000 genomes]
rs12358517	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2275760	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs3176882	0.82[AFR][1000 genomes]
rs3181121	0.90[EUR][1000 genomes]
rs3818833	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41291576	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4420188	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56747025	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58059905	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58169787	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60144080	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs61587319	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61731067	0.90[EUR][1000 genomes]
rs61736814	0.85[EUR][1000 genomes]
rs7070507	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7090630	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7093453	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7100644	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73315224	0.90[EUR][1000 genomes]
rs73329287	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73331134	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73333021	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97494000-97498200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:97495200-97495800	Weak transcription	Rectal Smooth Muscle	rectum

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