Variant report

Variant	rs11188388
Chromosome Location	chr10:97360503-97360504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97149447..97150483-chr10:97360357..97361198,4	K562	blood:
2	chr10:97134082..97135344-chr10:97360078..97361554,17	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11188367	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11188378	0.80[EUR][1000 genomes]
rs11188382	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188383	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188391	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188405	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188410	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188412	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11188413	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11188415	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11188419	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188424	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188431	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188448	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188450	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188451	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188461	0.85[EUR][1000 genomes]
rs11188466	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11188467	0.81[EUR][1000 genomes]
rs11188469	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs11188475	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11188479	0.81[AMR][1000 genomes]
rs11188481	0.81[AMR][1000 genomes]
rs11188491	0.81[AMR][1000 genomes]
rs11553577	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs12354465	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12357211	0.85[EUR][1000 genomes]
rs12357513	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12358517	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12359410	0.87[GIH][hapmap]
rs3818833	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41291576	0.81[EUR][1000 genomes]
rs4420188	0.81[AMR][1000 genomes]
rs56747025	0.81[EUR][1000 genomes]
rs58059905	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61587319	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61736814	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7070507	0.81[AMR][1000 genomes]
rs7090630	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs73329287	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73331134	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97359400-97364600	Weak transcription	Placenta	Placenta
3	chr10:97359800-97361000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr10:97359800-97361400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:97360000-97361200	Enhancers	Fetal Muscle Leg	muscle
6	chr10:97360000-97361600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:97360000-97364000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:97360200-97360800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:97360200-97361400	Enhancers	Colon Smooth Muscle	Colon
10	chr10:97360200-97361600	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:97360200-97364400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:97360200-97364600	Weak transcription	GM12878-XiMat	blood
13	chr10:97360400-97360600	Enhancers	Stomach Smooth Muscle	stomach
14	chr10:97360400-97361200	Enhancers	Brain Anterior Caudate	brain
15	chr10:97360400-97361400	Enhancers	Fetal Heart	heart
16	chr10:97360400-97364400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:97360400-97364600	Enhancers	HepG2	liver

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