Variant report

Variant	rs11188412
Chromosome Location	chr10:97401996-97401997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97401313..97403969-chr10:97407292..97409828,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11188367	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs11188378	0.83[EUR][1000 genomes]
rs11188382	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188383	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188388	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11188391	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11188405	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188413	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188423	0.88[JPT][hapmap]
rs11188424	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188433	0.88[JPT][hapmap]
rs11188448	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188450	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188451	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188461	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188467	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11188479	0.81[AMR][1000 genomes]
rs11188481	0.81[AMR][1000 genomes]
rs11188491	0.81[AMR][1000 genomes]
rs11188502	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11553577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12354465	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12357211	0.87[EUR][1000 genomes]
rs12357513	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12358517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12784530	0.88[JPT][hapmap]
rs2282305	0.88[JPT][hapmap]
rs3818833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41291576	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4420188	0.81[AMR][1000 genomes]
rs56747025	0.83[EUR][1000 genomes]
rs58059905	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61587319	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61736814	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7070507	0.81[AMR][1000 genomes]
rs7073937	1.00[JPT][hapmap]
rs7090630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7093453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs73329287	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73331134	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7893577	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97364000-97409200	Strong transcription	Primary T cells from cord blood	blood
2	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:97364400-97403200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:97364800-97403400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:97364800-97411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97365000-97403000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:97365000-97403400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:97376400-97411400	Weak transcription	Psoas Muscle	Psoas
9	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
12	chr10:97379800-97403200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:97380200-97403200	Strong transcription	Fetal Muscle Leg	muscle
14	chr10:97380200-97403400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:97380200-97408800	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:97380600-97403000	Strong transcription	NH-A	brain
17	chr10:97380600-97403200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:97380600-97403200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:97380600-97408000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:97380800-97409000	Strong transcription	Osteobl	bone
21	chr10:97381200-97403400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:97381600-97403000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:97383000-97411200	Strong transcription	Placenta	Placenta
24	chr10:97383200-97403000	Strong transcription	Fetal Muscle Trunk	muscle
25	chr10:97383400-97403000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:97383800-97403000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:97383800-97403000	Strong transcription	Fetal Brain Female	brain
28	chr10:97383800-97403200	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:97383800-97403200	Strong transcription	GM12878-XiMat	blood
30	chr10:97383800-97409400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:97383800-97410200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:97384000-97402800	Strong transcription	HSMM	muscle
33	chr10:97384000-97403000	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr10:97384000-97403200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr10:97384000-97403200	Strong transcription	Liver	Liver
36	chr10:97384200-97403000	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr10:97384400-97402800	Strong transcription	HUVEC	blood vessel
38	chr10:97384600-97402600	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr10:97385800-97408600	Strong transcription	Primary B cells from peripheral blood	blood
40	chr10:97386600-97411000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:97388800-97411000	Weak transcription	Fetal Brain Male	brain
42	chr10:97389200-97402000	Weak transcription	Stomach Mucosa	stomach
43	chr10:97389600-97413200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:97389800-97403000	Strong transcription	Fetal Stomach	stomach
45	chr10:97389800-97413200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:97390000-97411200	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr10:97390200-97403000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr10:97390200-97403000	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:97390200-97403400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:97390200-97403400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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