Variant report

Variant	rs7893577
Chromosome Location	chr10:97406406-97406407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97403502..97406467-chr10:97420459..97422699,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11188410	1.00[CHB][hapmap]
rs11188412	1.00[CHB][hapmap]
rs11188415	1.00[CHB][hapmap]
rs11188419	1.00[CHB][hapmap]
rs11188431	1.00[CHB][hapmap]
rs11188466	1.00[CHB][hapmap]
rs11188469	1.00[CHB][hapmap]
rs11188475	1.00[CHB][hapmap]
rs11553577	1.00[CHB][hapmap]
rs12358517	1.00[CHB][hapmap]
rs3818833	1.00[CHB][hapmap]
rs7086682	1.00[YRI][hapmap]
rs7090630	1.00[CHB][hapmap]
rs7093453	1.00[CHB][hapmap]
rs7898964	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97364000-97409200	Strong transcription	Primary T cells from cord blood	blood
2	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:97364800-97411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:97376400-97411400	Weak transcription	Psoas Muscle	Psoas
5	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
8	chr10:97380200-97408800	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:97380600-97408000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:97380800-97409000	Strong transcription	Osteobl	bone
11	chr10:97383000-97411200	Strong transcription	Placenta	Placenta
12	chr10:97383800-97409400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:97383800-97410200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:97385800-97408600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr10:97386600-97411000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:97388800-97411000	Weak transcription	Fetal Brain Male	brain
17	chr10:97389600-97413200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:97389800-97413200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:97390000-97411200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:97394400-97411400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr10:97399800-97413600	Strong transcription	Dnd41	blood
22	chr10:97400000-97412600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:97400800-97411200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:97401000-97415200	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:97401200-97411000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:97401800-97409200	Strong transcription	Primary B cells from cord blood	blood
27	chr10:97402000-97408600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:97402200-97415200	Weak transcription	Right Ventricle	heart
29	chr10:97402600-97410000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:97402600-97411000	Weak transcription	Thymus	Thymus
31	chr10:97402800-97410000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr10:97402800-97410800	Weak transcription	Brain Substantia Nigra	brain
33	chr10:97402800-97411000	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:97402800-97411000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:97402800-97415200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:97403000-97407800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr10:97403000-97408000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:97403000-97410800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr10:97403000-97410800	Weak transcription	Fetal Kidney	kidney
40	chr10:97403000-97411000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:97403000-97411000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:97403000-97411200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:97403000-97411200	Weak transcription	Left Ventricle	heart
44	chr10:97403000-97414400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:97403000-97415400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr10:97403200-97409600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr10:97404000-97407000	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr10:97404000-97407600	Enhancers	Stomach Mucosa	stomach
49	chr10:97404000-97409200	Strong transcription	GM12878-XiMat	blood
50	chr10:97404000-97410400	Genic enhancers	Fetal Intestine Small	intestine

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