Variant report

Variant	rs11188431
Chromosome Location	chr10:97439290-97439291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97438903..97441882-chr10:97445653..97448127,2	K562	blood:
2	chr10:97437393..97439419-chr10:97441061..97443059,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11188367	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs11188382	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188383	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188388	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188391	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11188405	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11188410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11188412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188413	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188423	0.88[JPT][hapmap]
rs11188424	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188433	0.88[JPT][hapmap]
rs11188448	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188450	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188451	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188461	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11188466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188467	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188479	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188481	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188491	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188502	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188508	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11553577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12354465	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12355114	0.84[AMR][1000 genomes]
rs12357211	0.92[EUR][1000 genomes]
rs12357513	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12358517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12784530	0.88[JPT][hapmap]
rs2275760	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2282305	0.88[JPT][hapmap]
rs3176882	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs3181121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3818833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41291576	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4420188	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56747025	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58059905	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58169787	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60144080	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61587319	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61731067	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61736814	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7070507	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7073937	1.00[JPT][hapmap]
rs7090630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7093453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7100644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73315224	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73329287	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73331134	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73333021	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7893577	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97416600-97441000	Weak transcription	Spleen	Spleen
2	chr10:97416800-97441600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:97416800-97442400	Weak transcription	Small Intestine	intestine
4	chr10:97416800-97443400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97417000-97439800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:97417000-97439800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:97417000-97439800	Weak transcription	Brain Substantia Nigra	brain
8	chr10:97417000-97441000	Weak transcription	HSMMtube	muscle
9	chr10:97417000-97442400	Weak transcription	Aorta	Aorta
10	chr10:97417000-97444200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:97417000-97445200	Weak transcription	Colonic Mucosa	Colon
12	chr10:97417000-97445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:97417000-97445800	Weak transcription	NHLF	lung
14	chr10:97417200-97439600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:97417200-97439800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:97417200-97440000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr10:97417200-97441000	Weak transcription	Thymus	Thymus
18	chr10:97417200-97441800	Weak transcription	Brain Angular Gyrus	brain
19	chr10:97417200-97442400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:97417200-97444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:97417200-97445800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr10:97417400-97439800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:97421800-97441800	Weak transcription	Gastric	stomach
24	chr10:97423000-97452000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:97423600-97441000	Weak transcription	Lung	lung
26	chr10:97423600-97441800	Weak transcription	Esophagus	oesophagus
27	chr10:97424000-97439600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:97424000-97440000	Weak transcription	Psoas Muscle	Psoas
29	chr10:97424000-97448200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:97424200-97439600	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:97424200-97440600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:97424400-97439600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:97424400-97439800	Weak transcription	Hela-S3	cervix
34	chr10:97424400-97440200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:97424400-97440200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:97424400-97440800	Weak transcription	Right Ventricle	heart
37	chr10:97424400-97443200	Weak transcription	Pancreas	Pancrea
38	chr10:97425600-97440800	Weak transcription	K562	blood
39	chr10:97427800-97452600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr10:97429600-97441200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:97430800-97441000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr10:97431200-97439600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:97431800-97446800	Weak transcription	Fetal Heart	heart
44	chr10:97431800-97450600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr10:97431800-97451200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:97432000-97450800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:97432800-97452000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:97433000-97451800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr10:97433400-97447600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:97433400-97447600	Strong transcription	Adipose Nuclei	Adipose

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