Variant report

Variant	rs61587319
Chromosome Location	chr10:97391448-97391449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97391290-97391469	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ALDH18A1	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11188367	0.85[EUR][1000 genomes]
rs11188378	0.80[EUR][1000 genomes]
rs11188382	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188383	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11188388	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188391	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188412	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188413	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188415	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188419	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188424	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188431	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11188448	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188450	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188451	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188461	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11188466	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11188467	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11188469	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11188475	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11188479	0.84[AMR][1000 genomes]
rs11188481	0.84[AMR][1000 genomes]
rs11188491	0.84[AMR][1000 genomes]
rs11553577	0.90[EUR][1000 genomes]
rs12354465	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12357211	0.85[EUR][1000 genomes]
rs12357513	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12358517	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3818833	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41291576	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4420188	0.84[AMR][1000 genomes]
rs56747025	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58059905	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61736814	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7070507	0.84[AMR][1000 genomes]
rs7090630	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73329287	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73331134	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97364000-97409200	Strong transcription	Primary T cells from cord blood	blood
2	chr10:97364000-97411000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:97364400-97403200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:97364800-97403400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr10:97364800-97411000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97365000-97403000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:97365000-97403400	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:97368400-97393000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:97376200-97400600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:97376400-97411400	Weak transcription	Psoas Muscle	Psoas
11	chr10:97376400-97415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:97376600-97415000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:97378200-97391800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:97378600-97414200	Weak transcription	Fetal Heart	heart
15	chr10:97379800-97403200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:97380200-97399200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:97380200-97403200	Strong transcription	Fetal Muscle Leg	muscle
18	chr10:97380200-97403400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:97380200-97408800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:97380600-97403000	Strong transcription	NH-A	brain
21	chr10:97380600-97403200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:97380600-97403200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:97380600-97408000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:97380800-97409000	Strong transcription	Osteobl	bone
25	chr10:97381000-97391600	Weak transcription	Brain Angular Gyrus	brain
26	chr10:97381200-97403400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:97381400-97393000	Weak transcription	Thymus	Thymus
28	chr10:97381600-97403000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:97383000-97411200	Strong transcription	Placenta	Placenta
30	chr10:97383200-97403000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr10:97383400-97398800	Strong transcription	Dnd41	blood
32	chr10:97383400-97400200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:97383400-97403000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr10:97383800-97394800	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr10:97383800-97395400	Strong transcription	HSMMtube	muscle
36	chr10:97383800-97397000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:97383800-97403000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:97383800-97403000	Strong transcription	Fetal Brain Female	brain
39	chr10:97383800-97403200	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr10:97383800-97403200	Strong transcription	GM12878-XiMat	blood
41	chr10:97383800-97409400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:97383800-97410200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr10:97384000-97392800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:97384000-97397200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr10:97384000-97397400	Strong transcription	Adipose Nuclei	Adipose
46	chr10:97384000-97402800	Strong transcription	HSMM	muscle
47	chr10:97384000-97403000	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:97384000-97403200	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr10:97384000-97403200	Strong transcription	Liver	Liver
50	chr10:97384200-97397000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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