Variant report

Variant	rs58169787
Chromosome Location	chr10:97584755-97584756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11188419	0.83[EUR][1000 genomes]
rs11188424	0.83[EUR][1000 genomes]
rs11188431	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11188448	0.85[EUR][1000 genomes]
rs11188450	0.85[EUR][1000 genomes]
rs11188451	0.85[EUR][1000 genomes]
rs11188461	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11188466	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188467	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188469	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11188475	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188479	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188481	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188491	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188502	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188508	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11553577	0.81[EUR][1000 genomes]
rs12355114	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12357211	0.80[EUR][1000 genomes]
rs12358517	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2275760	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176882	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181121	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818833	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs41291576	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4420188	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4512762	0.87[ASN][1000 genomes]
rs56747025	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57456033	0.87[AMR][1000 genomes]
rs59502315	0.93[ASN][1000 genomes]
rs60144080	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61503377	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61731067	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7070507	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7090630	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7093453	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100644	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315224	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315254	0.93[ASN][1000 genomes]
rs73315260	0.97[ASN][1000 genomes]
rs73315285	0.87[ASN][1000 genomes]
rs73317145	0.87[ASN][1000 genomes]
rs73329287	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73331134	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73333021	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898422	0.97[ASN][1000 genomes]
rs7913155	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97574800-97590800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr10:97575600-97596600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:97575800-97592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:97575800-97597000	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:97577200-97587200	Weak transcription	Lung	lung
6	chr10:97577200-97591400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:97578600-97588800	Weak transcription	Fetal Stomach	stomach
8	chr10:97578600-97604400	Weak transcription	Aorta	Aorta
9	chr10:97581000-97600600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:97581200-97596400	Weak transcription	Small Intestine	intestine
11	chr10:97581200-97602000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:97581400-97591000	Weak transcription	Spleen	Spleen
13	chr10:97582800-97594200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr10:97583200-97591000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:97583400-97589000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr10:97583400-97594600	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:97584000-97586600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr10:97584000-97589000	Weak transcription	Primary B cells from cord blood	blood
19	chr10:97584400-97584800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:97584400-97586800	Strong transcription	GM12878-XiMat	blood
21	chr10:97584600-97596800	Weak transcription	Brain Angular Gyrus	brain

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