Variant report

Variant	rs3793746
Chromosome Location	chr10:97415508-97415509
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97414876..97416556-chr10:97452777..97454283,2	MCF-7	breast:
2	chr10:97375956..97378752-chr10:97415049..97416983,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119977	Chromatin interaction
ENSG00000059573	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11592809	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11593038	0.86[ASN][1000 genomes]
rs11595248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11598540	0.86[ASN][1000 genomes]
rs12354465	1.00[CHB][hapmap]
rs12357513	1.00[CHB][hapmap]
rs12359410	1.00[CHB][hapmap]
rs12763743	1.00[CHB][hapmap]
rs12767650	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12770849	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12775780	0.86[ASN][1000 genomes]
rs12779833	0.86[ASN][1000 genomes]
rs1409710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2275272	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2296690	0.91[ASN][1000 genomes]
rs3176886	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3176888	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34832675	0.91[ASN][1000 genomes]
rs35712039	0.91[ASN][1000 genomes]
rs3765571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3793751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs55859130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58636501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7073937	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97411600-97415600	Weak transcription	Thymus	Thymus
2	chr10:97411600-97415600	Weak transcription	Spleen	Spleen
3	chr10:97412000-97415600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:97414400-97415800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:97414600-97415600	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:97414600-97415800	Flanking Active TSS	Dnd41	blood
7	chr10:97414600-97416800	Active TSS	Fetal Intestine Large	intestine
8	chr10:97414600-97416800	Active TSS	Fetal Intestine Small	intestine
9	chr10:97414600-97416800	Active TSS	NHDF-Ad	bronchial
10	chr10:97414600-97417200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:97415000-97415600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:97415000-97415600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr10:97415000-97415600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr10:97415000-97415600	Enhancers	Primary B cells from cord blood	blood
15	chr10:97415000-97415600	Flanking Active TSS	Hela-S3	cervix
16	chr10:97415000-97415600	Flanking Active TSS	NH-A	brain
17	chr10:97415000-97415600	Flanking Active TSS	NHEK	skin
18	chr10:97415000-97415600	Flanking Active TSS	Osteobl	bone
19	chr10:97415000-97415800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:97415000-97415800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr10:97415000-97415800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr10:97415000-97415800	Flanking Active TSS	HMEC	breast
23	chr10:97415000-97415800	Flanking Active TSS	HUVEC	blood vessel
24	chr10:97415000-97415800	Flanking Active TSS	K562	blood
25	chr10:97415000-97416000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr10:97415000-97416000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
27	chr10:97415000-97416800	Active TSS	H1 Cell Line	embryonic stem cell
28	chr10:97415000-97416800	Active TSS	Colonic Mucosa	Colon
29	chr10:97415000-97416800	Active TSS	A549	lung
30	chr10:97415000-97417000	Active TSS	HSMMtube	muscle
31	chr10:97415000-97417000	Active TSS	NHLF	lung
32	chr10:97415200-97415600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:97415200-97415600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr10:97415200-97415600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr10:97415200-97415600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:97415200-97415600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:97415200-97415600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:97415200-97415600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:97415200-97415600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr10:97415200-97415600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:97415200-97415600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:97415200-97415600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:97415200-97415600	Flanking Active TSS	Duodenum Mucosa	Duodenum
44	chr10:97415200-97415600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr10:97415200-97415600	Flanking Active TSS	Fetal Kidney	kidney
46	chr10:97415200-97415600	Active TSS	Fetal Muscle Trunk	muscle
47	chr10:97415200-97415600	Enhancers	Left Ventricle	heart
48	chr10:97415200-97415600	Flanking Active TSS	HSMM	muscle
49	chr10:97415200-97415800	Flanking Active TSS	Primary T cells from cord blood	blood
50	chr10:97415200-97415800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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