Variant report

Variant	rs12767650
Chromosome Location	chr10:97522297-97522298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97520911..97523722-chr10:97663024..97665930,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11592789	0.89[CEU][hapmap]
rs11592809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11592937	0.81[EUR][1000 genomes]
rs11593038	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11593693	0.86[AMR][1000 genomes]
rs11594340	0.87[EUR][1000 genomes]
rs11595122	0.89[CEU][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs11595248	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11596697	1.00[YRI][hapmap]
rs11598540	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11599779	1.00[YRI][hapmap]
rs12354465	1.00[CHB][hapmap]
rs12357513	1.00[CHB][hapmap]
rs12359410	1.00[CHB][hapmap]
rs12761112	0.86[AMR][1000 genomes]
rs12761960	0.89[CEU][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs12763743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770313	0.89[CEU][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs12770849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774334	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775780	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12779833	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12780375	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781327	0.86[AMR][1000 genomes]
rs12782273	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409710	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2275272	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2296690	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3176886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3176888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181115	1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs34296389	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34533159	0.86[AMR][1000 genomes]
rs34630379	0.81[EUR][1000 genomes]
rs34808745	0.83[EUR][1000 genomes]
rs34832675	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34833309	0.81[EUR][1000 genomes]
rs34836127	0.89[EUR][1000 genomes]
rs34847853	0.86[AMR][1000 genomes]
rs35051706	0.84[EUR][1000 genomes]
rs35700869	0.89[CEU][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs35712039	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35987262	0.87[EUR][1000 genomes]
rs3793746	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3793751	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55859130	0.90[ASN][1000 genomes]
rs56853511	1.00[ASN][1000 genomes]
rs58636501	0.90[ASN][1000 genomes]
rs68078796	0.89[EUR][1000 genomes]
rs7073937	1.00[CHB][hapmap]
rs71482374	0.91[EUR][1000 genomes]
rs71482376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71482377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71482378	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97516800-97524800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:97517600-97523000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:97517600-97523600	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:97518600-97534000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:97518800-97534000	Weak transcription	Fetal Stomach	stomach
6	chr10:97519400-97522600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
7	chr10:97520000-97527600	Weak transcription	Small Intestine	intestine
8	chr10:97521200-97522600	Enhancers	Primary T cells from cord blood	blood
9	chr10:97521200-97522600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:97521200-97523000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:97521400-97522400	Enhancers	Colon Smooth Muscle	Colon
12	chr10:97521600-97522400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr10:97521600-97522400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr10:97521800-97523600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr10:97521800-97527600	Weak transcription	Aorta	Aorta
16	chr10:97521800-97537400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:97521800-97537400	Weak transcription	Lung	lung
18	chr10:97522000-97522400	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr10:97522000-97522400	Flanking Active TSS	HUVEC	blood vessel
20	chr10:97522000-97523400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:97522200-97522400	Enhancers	Duodenum Mucosa	Duodenum
22	chr10:97522200-97522400	Enhancers	Rectal Smooth Muscle	rectum
23	chr10:97522200-97522400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr10:97522200-97528000	Weak transcription	Primary hematopoietic stem cells	blood

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