Variant report

Variant	rs68078796
Chromosome Location	chr10:97553258-97553259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11592789	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11592937	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11593038	0.82[EUR][1000 genomes]
rs11594010	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11594340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11594687	0.89[AMR][1000 genomes]
rs11594853	1.00[AFR][1000 genomes]
rs11595122	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11595248	0.81[EUR][1000 genomes]
rs11596697	0.88[AFR][1000 genomes]
rs11597564	1.00[AFR][1000 genomes]
rs11598540	0.82[EUR][1000 genomes]
rs11599779	1.00[AFR][1000 genomes]
rs12761960	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12763743	0.86[EUR][1000 genomes]
rs12765494	0.86[AMR][1000 genomes]
rs12767650	0.89[EUR][1000 genomes]
rs12770313	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12770849	0.91[EUR][1000 genomes]
rs12774334	0.88[EUR][1000 genomes]
rs12775780	0.82[EUR][1000 genomes]
rs12779833	0.81[EUR][1000 genomes]
rs12780375	0.87[EUR][1000 genomes]
rs12782273	0.86[EUR][1000 genomes]
rs3176886	0.85[EUR][1000 genomes]
rs3176888	0.87[EUR][1000 genomes]
rs3181115	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34296389	0.89[EUR][1000 genomes]
rs34332904	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34460407	0.89[AMR][1000 genomes]
rs34630379	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34808745	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34833309	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34836127	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34955155	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34963139	1.00[AFR][1000 genomes]
rs35051706	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35691144	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35700869	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35822210	0.83[AMR][1000 genomes]
rs35968758	1.00[AFR][1000 genomes]
rs35987262	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36103691	1.00[AFR][1000 genomes]
rs57670810	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66527979	1.00[AFR][1000 genomes]
rs66706740	1.00[AFR][1000 genomes]
rs66751616	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs67783179	0.89[AMR][1000 genomes]
rs67857430	0.89[AMR][1000 genomes]
rs71482367	0.81[EUR][1000 genomes]
rs71482374	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71482376	0.91[EUR][1000 genomes]
rs71482377	0.91[EUR][1000 genomes]
rs71482378	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1052213	chr10:97536795-97561941	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97544800-97554200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:97544800-97558200	Weak transcription	Spleen	Spleen
3	chr10:97550600-97557200	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:97550800-97556800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:97551400-97553600	Enhancers	Aorta	Aorta
6	chr10:97551400-97554400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:97551400-97556800	Enhancers	Primary B cells from cord blood	blood
8	chr10:97551600-97553400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:97551600-97553600	Enhancers	Osteobl	bone
10	chr10:97551800-97553400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:97551800-97554200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:97551800-97554200	Enhancers	Adipose Nuclei	Adipose
13	chr10:97551800-97554200	Enhancers	Fetal Muscle Leg	muscle
14	chr10:97551800-97554200	Enhancers	NHDF-Ad	bronchial
15	chr10:97551800-97554800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr10:97552200-97553400	Enhancers	Brain Anterior Caudate	brain
17	chr10:97552200-97553400	Enhancers	Colon Smooth Muscle	Colon
18	chr10:97552200-97553600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:97552200-97554400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:97552200-97555000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr10:97552200-97555200	Enhancers	Fetal Stomach	stomach
22	chr10:97552200-97556200	Enhancers	HUVEC	blood vessel
23	chr10:97552400-97553400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:97552400-97553400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:97552400-97553400	Enhancers	Fetal Lung	lung
26	chr10:97552400-97553600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:97552400-97553600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:97552400-97553600	Enhancers	Brain Substantia Nigra	brain
29	chr10:97552400-97553600	Enhancers	NH-A	brain
30	chr10:97552400-97553800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:97552400-97554400	Enhancers	Placenta	Placenta
32	chr10:97552400-97554800	Enhancers	Primary hematopoietic stem cells	blood
33	chr10:97552600-97553400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:97552600-97553400	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr10:97552600-97553400	Enhancers	Muscle Satellite Cultured Cells	--
36	chr10:97552600-97553400	Enhancers	Brain Cingulate Gyrus	brain
37	chr10:97552600-97553400	Enhancers	Brain Hippocampus Middle	brain
38	chr10:97552600-97553400	Enhancers	Duodenum Mucosa	Duodenum
39	chr10:97552600-97553400	Enhancers	Fetal Kidney	kidney
40	chr10:97552600-97553400	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr10:97552600-97553600	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr10:97552600-97553600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:97552600-97553600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr10:97552600-97553600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr10:97552600-97553600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr10:97552600-97553600	Enhancers	Rectal Smooth Muscle	rectum
47	chr10:97552600-97553800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:97552800-97553600	Flanking Active TSS	GM12878-XiMat	blood
49	chr10:97552800-97553800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:97552800-97554000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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