Variant report

Variant	rs34955155
Chromosome Location	chr10:97654229-97654230
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11592937	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11594010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11594340	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11594853	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11595122	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11596697	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11597564	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11599779	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12770313	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3176886	0.82[EUR][1000 genomes]
rs3181115	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34630379	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34833309	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34963139	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35051706	0.83[AMR][1000 genomes]
rs35691144	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35700869	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35968758	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35987262	0.83[AMR][1000 genomes]
rs36103691	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66527979	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66706740	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66751616	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs68078796	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71482374	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97602400-97655400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:97619600-97655000	Weak transcription	HUVEC	blood vessel
3	chr10:97621000-97666800	Weak transcription	Gastric	stomach
4	chr10:97622800-97666600	Weak transcription	Thymus	Thymus
5	chr10:97623800-97666600	Weak transcription	Right Ventricle	heart
6	chr10:97625200-97655200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:97625400-97666400	Weak transcription	Osteobl	bone
8	chr10:97626400-97666400	Weak transcription	Pancreas	Pancrea
9	chr10:97628000-97666800	Weak transcription	Esophagus	oesophagus
10	chr10:97628200-97655600	Weak transcription	Brain Anterior Caudate	brain
11	chr10:97628400-97657600	Weak transcription	Hela-S3	cervix
12	chr10:97629200-97655200	Weak transcription	NH-A	brain
13	chr10:97629200-97663000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:97631200-97663000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:97632200-97660400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:97632200-97667000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:97633200-97655600	Weak transcription	Psoas Muscle	Psoas
18	chr10:97633200-97655800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:97633400-97655200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:97633400-97655600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:97633400-97656000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:97633400-97659800	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:97633400-97666600	Weak transcription	Brain Angular Gyrus	brain
24	chr10:97633800-97666600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:97633800-97666600	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:97634000-97663200	Weak transcription	Spleen	Spleen
27	chr10:97634400-97655200	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:97634400-97655200	Weak transcription	Placenta	Placenta
29	chr10:97634400-97655600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr10:97634400-97659800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:97634400-97666800	Weak transcription	Lung	lung
32	chr10:97634600-97655400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:97634600-97666400	Weak transcription	Brain Germinal Matrix	brain
34	chr10:97634600-97666800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:97634800-97667000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:97635200-97655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:97635600-97655200	Weak transcription	Fetal Thymus	thymus
38	chr10:97635800-97666600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:97636200-97655000	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:97636200-97655600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:97636400-97654400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:97636400-97655200	Weak transcription	Liver	Liver
43	chr10:97636400-97655600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:97636400-97656000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr10:97636400-97662600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr10:97636400-97666400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr10:97636600-97654800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:97636800-97654400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:97636800-97655000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:97636800-97655000	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links