Variant report

Variant	rs66751616
Chromosome Location	chr10:97655807-97655808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97654990..97656934-chr10:97659320..97661534,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11592937	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11594010	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11594340	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11594853	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11595122	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11596697	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11597564	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11599779	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12761960	0.82[EUR][1000 genomes]
rs12763743	0.82[EUR][1000 genomes]
rs12770313	0.84[EUR][1000 genomes]
rs12780375	0.83[EUR][1000 genomes]
rs12782273	0.82[EUR][1000 genomes]
rs3176886	0.85[EUR][1000 genomes]
rs3176888	0.83[EUR][1000 genomes]
rs3181115	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34296389	0.81[EUR][1000 genomes]
rs34630379	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34833309	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34836127	0.82[EUR][1000 genomes]
rs34955155	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34963139	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35691144	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35700869	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35968758	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36103691	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66527979	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66706740	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68078796	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs71482374	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97621000-97666800	Weak transcription	Gastric	stomach
2	chr10:97622800-97666600	Weak transcription	Thymus	Thymus
3	chr10:97623800-97666600	Weak transcription	Right Ventricle	heart
4	chr10:97625400-97666400	Weak transcription	Osteobl	bone
5	chr10:97626400-97666400	Weak transcription	Pancreas	Pancrea
6	chr10:97628000-97666800	Weak transcription	Esophagus	oesophagus
7	chr10:97628400-97657600	Weak transcription	Hela-S3	cervix
8	chr10:97629200-97663000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:97631200-97663000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:97632200-97660400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:97632200-97667000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:97633400-97656000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:97633400-97659800	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:97633400-97666600	Weak transcription	Brain Angular Gyrus	brain
15	chr10:97633800-97666600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:97633800-97666600	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:97634000-97663200	Weak transcription	Spleen	Spleen
18	chr10:97634400-97659800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:97634400-97666800	Weak transcription	Lung	lung
20	chr10:97634600-97666400	Weak transcription	Brain Germinal Matrix	brain
21	chr10:97634600-97666800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:97634800-97667000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:97635800-97666600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:97636400-97656000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:97636400-97662600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:97636400-97666400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:97636800-97666400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:97638600-97666600	Weak transcription	Colonic Mucosa	Colon
29	chr10:97640000-97656200	Weak transcription	HepG2	liver
30	chr10:97641200-97662800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:97643200-97666600	Weak transcription	Fetal Heart	heart
32	chr10:97644600-97661400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr10:97646600-97666400	Weak transcription	HSMM	muscle
34	chr10:97648000-97662600	Weak transcription	K562	blood
35	chr10:97648000-97666400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:97648200-97657800	Weak transcription	NHDF-Ad	bronchial
37	chr10:97648600-97659800	Weak transcription	NHEK	skin
38	chr10:97649400-97662400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:97649400-97666600	Weak transcription	Fetal Intestine Large	intestine
40	chr10:97650000-97666600	Weak transcription	Fetal Intestine Small	intestine
41	chr10:97650200-97657400	Weak transcription	GM12878-XiMat	blood
42	chr10:97650200-97662600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:97651400-97659200	Weak transcription	Left Ventricle	heart
44	chr10:97651800-97666400	Weak transcription	A549	lung
45	chr10:97652200-97666400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:97652800-97662400	Weak transcription	Brain Substantia Nigra	brain
47	chr10:97652800-97662400	Weak transcription	Dnd41	blood
48	chr10:97653800-97666600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:97654000-97664800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:97654000-97665000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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