Variant report

Variant	rs12781327
Chromosome Location	chr10:97326949-97326950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97249016..97250688-chr10:97324094..97327075,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11592789	0.81[AMR][1000 genomes]
rs11592809	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11593038	0.88[AMR][1000 genomes]
rs11593693	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11594687	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11595248	0.88[AMR][1000 genomes]
rs11598540	0.88[AMR][1000 genomes]
rs12761112	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12767650	0.86[AMR][1000 genomes]
rs12770849	0.86[AMR][1000 genomes]
rs12774334	0.81[AMR][1000 genomes]
rs12775780	0.88[AMR][1000 genomes]
rs12779833	0.88[AMR][1000 genomes]
rs1409710	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2275272	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2296690	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34332904	0.81[AMR][1000 genomes]
rs34460407	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34533159	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34832675	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34847853	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35712039	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35822210	0.84[EUR][1000 genomes]
rs3793751	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57670810	0.81[AMR][1000 genomes]
rs67783179	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67857430	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71482367	0.82[AMR][1000 genomes]
rs71482376	0.86[AMR][1000 genomes]
rs71482377	0.86[AMR][1000 genomes]
rs71482378	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv524227	chr10:97324127-97328227	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97321600-97327400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:97321600-97327600	Weak transcription	Right Atrium	heart
3	chr10:97321600-97328000	Weak transcription	Lung	lung
4	chr10:97321600-97329200	Enhancers	Placenta	Placenta
5	chr10:97321600-97332200	Weak transcription	Right Ventricle	heart
6	chr10:97321800-97327800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:97321800-97331800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:97321800-97332200	Weak transcription	Brain Anterior Caudate	brain
9	chr10:97322000-97327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:97322400-97328200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:97322400-97328200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:97323000-97328000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:97326200-97327400	Weak transcription	Fetal Lung	lung
14	chr10:97326200-97327600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:97326200-97327800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:97326200-97327800	Weak transcription	Hela-S3	cervix
17	chr10:97326200-97332000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr10:97326400-97327600	Weak transcription	Fetal Stomach	stomach
19	chr10:97326400-97327800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:97326600-97327600	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:97326600-97327600	Weak transcription	Stomach Smooth Muscle	stomach

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