Variant report

Variant	rs34772783
Chromosome Location	chr10:97321269-97321270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97321215-97321664	PANC-1	pancreas:	n/a	n/a
2	TAF1	chr10:97319723-97321496	H1-neurons	neurons:	n/a	n/a
3	FOS	chr10:97321144-97321407	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr10:97320828-97321736	U87	brain:	n/a	n/a
5	YY1	chr10:97321246-97321453	K562	blood:	n/a	n/a
6	POLR2A	chr10:97320795-97321502	Hela-S3	cervix:	n/a	n/a
7	MAX	chr10:97321069-97321546	GM12878	blood:	n/a	chr10:97321213-97321223
8	MYC	chr10:97320984-97321476	MCF10A-Er-Src	breast:	n/a	chr10:97321213-97321223
9	HDAC2	chr10:97321038-97321550	HepG2	liver:	n/a	n/a
10	MXI1	chr10:97319905-97321688	IMR90	lung:	n/a	n/a
11	ZNF143	chr10:97321179-97321734	H1-hESC	embryonic stem cell:	n/a	chr10:97321346-97321356
12	ZBTB7A	chr10:97320766-97321409	K562	blood:	n/a	chr10:97321310-97321317
13	CEBPD	chr10:97320869-97321324	HepG2	liver:	n/a	n/a
14	MAX	chr10:97321004-97321581	MCF-7	breast:	n/a	chr10:97321213-97321223
15	SIN3AK20	chr10:97320970-97321396	HepG2	liver:	n/a	n/a
16	POLR2A	chr10:97320749-97321572	K562	blood:	n/a	n/a
17	SMARCB1	chr10:97320286-97321578	Hela-S3	cervix:	n/a	n/a
18	YY1	chr10:97320908-97321511	K562	blood:	n/a	chr10:97321203-97321217
19	TAF1	chr10:97320916-97321632	ECC-1	luminal epithelium:	n/a	n/a
20	POLR2A	chr10:97321007-97321540	HepG2	liver:	n/a	n/a
21	MXI1	chr10:97319701-97321823	SK-N-SH	brain:	n/a	n/a
22	POLR2A	chr10:97320741-97321694	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr10:97320073-97321601	HUVEC	blood vessel:	n/a	n/a
24	ZBTB7A	chr10:97320243-97321527	ECC-1	luminal epithelium:	n/a	chr10:97321310-97321317
25	TAF7	chr10:97321007-97321618	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr10:97320984-97321504	A549	lung:	n/a	n/a
27	MAX	chr10:97321046-97321571	H1-hESC	embryonic stem cell:	n/a	chr10:97321213-97321223
28	NFIC	chr10:97320911-97321696	ECC-1	luminal epithelium:	n/a	n/a
29	MAZ	chr10:97320557-97321357	GM12878	blood:	n/a	chr10:97321213-97321223
30	POLR2A	chr10:97320829-97321420	GM12892	blood:	n/a	n/a
31	USF1	chr10:97320889-97321608	ECC-1	luminal epithelium:	n/a	n/a
32	CREB1	chr10:97320909-97321440	A549	lung:	n/a	n/a
33	STAT3	chr10:97321173-97321425	MCF10A-Er-Src	breast:	n/a	n/a
34	EP300	chr10:97321203-97321732	HepG2	liver:	n/a	chr10:97321347-97321363
35	CREB1	chr10:97320993-97321439	H1-hESC	embryonic stem cell:	n/a	n/a
36	HEY1	chr10:97320865-97321524	K562	blood:	n/a	chr10:97321169-97321178 chr10:97321171-97321180
37	CHD2	chr10:97321133-97321457	GM12878	blood:	n/a	n/a
38	TCF7L2	chr10:97320363-97321601	Hela-S3	cervix:	n/a	chr10:97320658-97320667 chr10:97320658-97320668 chr10:97320654-97320670
39	ZNF143	chr10:97321139-97321742	K562	blood:	n/a	chr10:97321346-97321356
40	RCOR1	chr10:97321175-97321881	K562	blood:	n/a	n/a
41	KAP1	chr10:97321214-97321691	U2OS	brain:	n/a	n/a
42	ELF1	chr10:97321043-97321507	HepG2	liver:	n/a	chr10:97321375-97321387
43	POLR2A	chr10:97320964-97321507	K562	blood:	n/a	n/a
44	USF1	chr10:97321096-97321386	SK-N-SH_RA	brain:	n/a	n/a
45	BACH1	chr10:97321201-97321271	K562	blood:	n/a	n/a
46	BHLHE40	chr10:97321163-97321426	GM12878	blood:	n/a	n/a
47	TCF12	chr10:97320975-97321311	HepG2	liver:	n/a	chr10:97321135-97321142 chr10:97321134-97321144
48	NFYB	chr10:97321026-97321395	GM12878	blood:	n/a	chr10:97321192-97321207 chr10:97321189-97321204 chr10:97321192-97321207
49	TAF1	chr10:97320877-97321548	HepG2	liver:	n/a	n/a
50	MAX	chr10:97321081-97321679	A549	lung:	n/a	chr10:97321213-97321223

Variant related genes	Relation type
SORBS1	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11594687	0.88[EUR][1000 genomes]
rs12765494	0.81[EUR][1000 genomes]
rs34460407	0.88[EUR][1000 genomes]
rs35822210	0.85[EUR][1000 genomes]
rs67783179	0.87[EUR][1000 genomes]
rs67857430	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv552022	chr10:97308114-97328227	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97315200-97321600	Active TSS	Aorta	Aorta
2	chr10:97316800-97321600	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr10:97317000-97321600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:97317200-97321600	Active TSS	Right Ventricle	heart
5	chr10:97317800-97321600	Active TSS	Colon Smooth Muscle	Colon
6	chr10:97318000-97321600	Active TSS	Brain Angular Gyrus	brain
7	chr10:97318200-97321600	Active TSS	Brain Hippocampus Middle	brain
8	chr10:97318200-97321600	Active TSS	HSMMtube	muscle
9	chr10:97318400-97321600	Active TSS	Brain Cingulate Gyrus	brain
10	chr10:97318600-97321600	Active TSS	Brain Anterior Caudate	brain
11	chr10:97318800-97321600	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr10:97318800-97321600	Active TSS	Rectal Smooth Muscle	rectum
13	chr10:97319000-97321400	Active TSS	Brain Substantia Nigra	brain
14	chr10:97319000-97321600	Active TSS	HSMM	muscle
15	chr10:97319200-97321600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:97319400-97321600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:97319400-97321600	Active TSS	Ovary	ovary
18	chr10:97319400-97321800	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr10:97319400-97321800	Active TSS	H9 Cell Line	embryonic stem cell
20	chr10:97319600-97321400	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr10:97319600-97321400	Active TSS	Duodenum Mucosa	Duodenum
22	chr10:97319600-97321600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr10:97319600-97321600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:97319600-97321600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:97319600-97321600	Active TSS	Gastric	stomach
26	chr10:97319600-97321600	Active TSS	Left Ventricle	heart
27	chr10:97319600-97321600	Active TSS	Lung	lung
28	chr10:97319600-97321600	Active TSS	Psoas Muscle	Psoas
29	chr10:97319600-97321800	Active TSS	Brain Germinal Matrix	brain
30	chr10:97319600-97321800	Active TSS	Fetal Brain Male	brain
31	chr10:97319600-97321800	Active TSS	Fetal Brain Female	brain
32	chr10:97319800-97321400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:97319800-97321600	Active TSS	Fetal Intestine Large	intestine
34	chr10:97319800-97321600	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr10:97319800-97321600	Active TSS	Right Atrium	heart
36	chr10:97320000-97321400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:97320000-97321600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:97320200-97321600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:97320200-97321600	Active TSS	Fetal Intestine Small	intestine
40	chr10:97320200-97321600	Active TSS	Pancreas	Pancrea
41	chr10:97320200-97321600	Active TSS	NHLF	lung
42	chr10:97320200-97321800	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr10:97320200-97321800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:97320400-97321400	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr10:97320400-97321400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:97320400-97321400	Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr10:97320400-97321400	Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr10:97320400-97321400	Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr10:97320400-97321400	Active TSS	Colonic Mucosa	Colon
50	chr10:97320400-97321400	Active TSS	Placenta	Placenta

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