Variant report

Variant	rs10882806
Chromosome Location	chr10:98262516-98262517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10882827	1.00[JPT][hapmap]
rs11188776	1.00[EUR][1000 genomes]
rs11188794	1.00[EUR][1000 genomes]
rs11188806	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11188822	0.84[JPT][hapmap]
rs11188824	1.00[EUR][1000 genomes]
rs4919040	0.81[JPT][hapmap]
rs9633705	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98254400-98266400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:98261000-98266400	Enhancers	HMEC	breast
3	chr10:98261200-98263800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:98261200-98264400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:98261400-98263600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:98261600-98266200	Weak transcription	Left Ventricle	heart
7	chr10:98261600-98266200	Weak transcription	Right Ventricle	heart
8	chr10:98261600-98266600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:98261800-98262600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:98261800-98262800	Enhancers	Esophagus	oesophagus
11	chr10:98261800-98263800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:98261800-98268400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:98262000-98262600	Flanking Active TSS	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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