Variant report

Variant	rs11188806
Chromosome Location	chr10:98266998-98266999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10882806	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs10882827	1.00[JPT][hapmap]
rs11188776	1.00[EUR][1000 genomes]
rs11188794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188822	0.82[JPT][hapmap]
rs11188824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3814225	1.00[CHB][hapmap]
rs9633705	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98261800-98268400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:98265400-98267600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:98265400-98268200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:98265400-98268200	Weak transcription	HSMMtube	muscle
5	chr10:98265600-98267200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:98266200-98267000	Enhancers	Pancreas	Pancrea
7	chr10:98266400-98267000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:98266400-98267000	Enhancers	Fetal Muscle Leg	muscle
9	chr10:98266400-98268600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:98266400-98268600	Weak transcription	HMEC	breast
11	chr10:98266400-98268800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:98266400-98272200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:98266600-98268600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:98266600-98268600	Weak transcription	Left Ventricle	heart
15	chr10:98266600-98268600	Weak transcription	NHEK	skin
16	chr10:98266800-98267400	Enhancers	Fetal Muscle Trunk	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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