Variant report

Variant	rs10882990
Chromosome Location	chr10:99452110-99452111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10882987	0.84[CEU][hapmap]
rs11189312	0.84[CEU][hapmap]
rs11189321	0.84[CEU][hapmap]
rs11189328	0.84[CEU][hapmap]
rs11189331	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12218718	0.85[EUR][1000 genomes]
rs2065672	0.84[CEU][hapmap]
rs3818780	0.84[CEU][hapmap]
rs7072085	0.84[CEU][hapmap]
rs7896659	0.85[EUR][1000 genomes]
rs7908082	0.86[EUR][1000 genomes]
rs7908350	0.92[EUR][1000 genomes]
rs7922721	0.92[EUR][1000 genomes]
rs9787703	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99448200-99452200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:99448600-99456200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:99448600-99457800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:99449800-99455800	Weak transcription	HepG2	liver
5	chr10:99450200-99453400	Weak transcription	NH-A	brain
6	chr10:99451800-99452200	Enhancers	Stomach Mucosa	stomach
7	chr10:99452000-99452200	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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