Variant report

Variant	rs7072085
Chromosome Location	chr10:99442262-99442263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99441784..99444101-chr10:99445056..99446700,2	K562	blood:
2	chr10:99442213..99445249-chr10:99446890..99449549,3	K562	blood:

Variant related genes	Relation type
ENSG00000119986	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10882983	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882987	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882990	0.84[CEU][hapmap]
rs11189312	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11189321	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11189324	0.82[EUR][1000 genomes]
rs11189328	1.00[CEU][hapmap]
rs12049715	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12219065	0.91[EUR][1000 genomes]
rs2065671	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2065672	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3818780	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4291605	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs45491602	0.92[EUR][1000 genomes]
rs57574145	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1045292	chr10:99411153-99450861	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99401800-99443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99402000-99444600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:99409200-99444800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:99409400-99445800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:99426600-99444600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:99426800-99444800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:99428000-99446000	Weak transcription	Fetal Kidney	kidney
8	chr10:99429600-99443600	Weak transcription	Psoas Muscle	Psoas
9	chr10:99429800-99445400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:99433800-99443000	Weak transcription	Right Atrium	heart
11	chr10:99435200-99443400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:99435400-99444800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:99435400-99446000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:99435600-99443400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:99435600-99445000	Weak transcription	NH-A	brain
16	chr10:99435600-99446400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:99435800-99444400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:99435800-99444600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr10:99435800-99445000	Weak transcription	Primary T cells from cord blood	blood
20	chr10:99435800-99445400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:99435800-99446000	Weak transcription	Thymus	Thymus
22	chr10:99435800-99446200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:99436000-99444800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:99436000-99445600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:99436000-99446200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:99436000-99446200	Weak transcription	Fetal Brain Female	brain
27	chr10:99436000-99446200	Weak transcription	Fetal Thymus	thymus
28	chr10:99436200-99444800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:99436200-99445600	Weak transcription	Fetal Brain Male	brain
30	chr10:99436200-99446000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:99436200-99446200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:99436200-99446400	Weak transcription	Brain Germinal Matrix	brain
33	chr10:99437000-99443200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:99437000-99444800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:99437000-99445200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr10:99437200-99443400	Weak transcription	HUVEC	blood vessel
37	chr10:99437200-99443600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:99437400-99444600	Weak transcription	Dnd41	blood
39	chr10:99437400-99445000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:99437600-99443400	Weak transcription	Fetal Lung	lung
41	chr10:99437600-99443600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:99437600-99443600	Weak transcription	Brain Anterior Caudate	brain
43	chr10:99437600-99445200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:99437600-99446000	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr10:99437600-99446200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:99437600-99446200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:99437800-99443000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr10:99437800-99443400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:99437800-99443400	Weak transcription	GM12878-XiMat	blood
50	chr10:99437800-99443600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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