Variant report

Variant	rs10882983
Chromosome Location	chr10:99434760-99434761
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99433977..99435889-chr10:99447100..99448771,2	K562	blood:
2	chr10:99431862..99434859-chr10:99467271..99469904,2	MCF-7	breast:
3	chr10:99408792..99411282-chr10:99432665..99436931,3	MCF-7	breast:
4	chr10:99425999..99428953-chr10:99433679..99435549,2	MCF-7	breast:
5	chr10:99392115..99393990-chr10:99434724..99436655,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171160	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10882987	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11189312	0.96[EUR][1000 genomes]
rs11189321	0.99[EUR][1000 genomes]
rs11189324	0.90[EUR][1000 genomes]
rs12049715	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12219065	0.96[EUR][1000 genomes]
rs2065671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818780	0.99[EUR][1000 genomes]
rs4291605	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45491602	0.99[EUR][1000 genomes]
rs57574145	0.96[EUR][1000 genomes]
rs7072085	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1045292	chr10:99411153-99450861	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99401800-99443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99402000-99444600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:99409200-99444800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:99409400-99445800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:99410400-99436200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:99410400-99436200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:99411000-99437000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:99411600-99437800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:99420800-99436200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:99421200-99436200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:99421600-99435800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:99421600-99440400	Strong transcription	Fetal Stomach	stomach
13	chr10:99421800-99435800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:99421800-99436600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:99422200-99437800	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:99424800-99435000	Weak transcription	Fetal Brain Male	brain
17	chr10:99424800-99437800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:99425000-99436800	Weak transcription	Stomach Mucosa	stomach
19	chr10:99426600-99444600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:99426800-99444800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:99428000-99436600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:99428000-99446000	Weak transcription	Fetal Kidney	kidney
23	chr10:99428600-99435200	Weak transcription	HUVEC	blood vessel
24	chr10:99429600-99443600	Weak transcription	Psoas Muscle	Psoas
25	chr10:99429800-99445400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr10:99430000-99437200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:99430600-99434800	Strong transcription	Fetal Intestine Small	intestine
28	chr10:99431000-99440000	Strong transcription	Placenta	Placenta
29	chr10:99432000-99435000	Strong transcription	HSMMtube	muscle
30	chr10:99432000-99438200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:99432600-99436000	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:99432600-99439400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr10:99432600-99440800	Strong transcription	HepG2	liver
34	chr10:99432800-99435800	Strong transcription	Primary T cells from cord blood	blood
35	chr10:99432800-99435800	Strong transcription	Thymus	Thymus
36	chr10:99432800-99436200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:99432800-99440000	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr10:99433000-99435000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:99433000-99436000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr10:99433000-99439600	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:99433200-99434800	Genic enhancers	HMEC	breast
42	chr10:99433200-99435800	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr10:99433200-99435800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:99433200-99435800	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:99433200-99436000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:99433200-99436000	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:99433200-99436000	Strong transcription	Fetal Thymus	thymus
48	chr10:99433200-99436000	Strong transcription	Lung	lung
49	chr10:99433200-99436200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr10:99433200-99436200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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