Variant report

Variant	rs57574145
Chromosome Location	chr10:99429784-99429785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99426144..99428335-chr10:99429766..99431937,2	K562	blood:
2	chr10:99428918..99430683-chr10:99435821..99438259,2	MCF-7	breast:
3	chr10:99428995..99431039-chr10:99435330..99437138,2	K562	blood:
4	chr10:99414326..99417257-chr10:99429024..99430820,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10882983	0.96[EUR][1000 genomes]
rs10882987	0.91[EUR][1000 genomes]
rs11189312	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11189321	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11189324	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12049715	0.91[EUR][1000 genomes]
rs12219065	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065671	0.96[EUR][1000 genomes]
rs2065672	0.96[EUR][1000 genomes]
rs3818780	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4291605	0.95[EUR][1000 genomes]
rs45491602	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7072085	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1045292	chr10:99411153-99450861	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99401800-99443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99402000-99444600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:99408600-99433400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:99409200-99444800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:99409400-99445800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:99410200-99431800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:99410400-99436200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:99410400-99436200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:99410600-99431200	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:99411000-99437000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:99411600-99433400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:99411600-99437800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:99413000-99433400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:99413200-99433600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:99419400-99433600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:99420600-99431800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:99420800-99436200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr10:99421000-99431800	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:99421000-99433600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:99421200-99430600	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:99421200-99431000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:99421200-99431200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:99421200-99431600	Strong transcription	NHEK	skin
24	chr10:99421200-99433600	Strong transcription	Osteobl	bone
25	chr10:99421200-99433800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:99421200-99436200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr10:99421400-99429800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:99421400-99430400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr10:99421400-99430600	Genic enhancers	Fetal Intestine Small	intestine
30	chr10:99421600-99429800	Strong transcription	Dnd41	blood
31	chr10:99421600-99431200	Strong transcription	Fetal Muscle Leg	muscle
32	chr10:99421600-99431200	Strong transcription	Fetal Thymus	thymus
33	chr10:99421600-99433600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:99421600-99435800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:99421600-99440400	Strong transcription	Fetal Stomach	stomach
36	chr10:99421800-99430600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr10:99421800-99431200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:99421800-99435800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:99421800-99436600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:99422000-99431600	Strong transcription	Brain Anterior Caudate	brain
41	chr10:99422000-99432400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:99422200-99430600	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr10:99422200-99430600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr10:99422200-99431200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:99422200-99431200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr10:99422200-99437800	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:99423800-99432200	Strong transcription	Lung	lung
48	chr10:99424000-99429800	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr10:99424000-99430000	Strong transcription	NHLF	lung
50	chr10:99424400-99434000	Weak transcription	Fetal Heart	heart

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