Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118011033..118013216-chr10:118027087..118029971,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10218849	0.91[ASN][1000 genomes]
rs10787638	0.80[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197612	0.93[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs11197620	0.81[ASN][1000 genomes]
rs11599593	0.91[ASN][1000 genomes]
rs2420252	0.81[GIH][hapmap]
rs2901100	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2901101	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740572	0.91[ASW][hapmap];0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4554795	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078853	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087136	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1043339	chr10:118010822-118025492	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10885889	LMBR1	trans	cerebellum	SCAN
rs10885889	VAX1	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118007800-118013200	Weak transcription	HSMMtube	muscle
2	chr10:118008000-118014000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr10:118008600-118012600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:118008600-118013400	Weak transcription	HSMM	muscle
5	chr10:118008600-118014000	Weak transcription	Fetal Stomach	stomach
6	chr10:118009000-118013200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:118011000-118014000	Weak transcription	Fetal Lung	lung
8	chr10:118011200-118012200	Enhancers	Liver	Liver
9	chr10:118011200-118012200	Enhancers	Gastric	stomach
10	chr10:118011200-118012200	Enhancers	Pancreas	Pancrea
11	chr10:118011200-118015200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:118011400-118013000	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:118011400-118014400	Weak transcription	Brain Anterior Caudate	brain
14	chr10:118011600-118012200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:118011800-118012200	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr10:118012000-118012200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:118012000-118012200	Enhancers	Spleen	Spleen
18	chr10:118012000-118012400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:118012000-118013600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:118012000-118014400	Weak transcription	Stomach Smooth Muscle	stomach

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