Variant report

Variant	rs11599593
Chromosome Location	chr10:118026243-118026244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10218849	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787638	0.91[ASN][1000 genomes]
rs10787639	0.90[EUR][1000 genomes]
rs10885889	0.91[ASN][1000 genomes]
rs11197611	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11197612	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197620	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12768041	0.81[AMR][1000 genomes]
rs12774375	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1419874	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2901100	0.90[ASN][1000 genomes]
rs2901101	0.91[ASN][1000 genomes]
rs3740572	0.90[ASN][1000 genomes]
rs4554795	0.91[ASN][1000 genomes]
rs4751959	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7078853	0.91[ASN][1000 genomes]
rs7087136	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118019200-118028800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:118020600-118030200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr10:118021800-118028800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:118022200-118027400	Strong transcription	Fetal Muscle Leg	muscle
5	chr10:118022200-118028200	Strong transcription	Liver	Liver
6	chr10:118022200-118028400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:118023000-118028800	Weak transcription	Fetal Kidney	kidney
8	chr10:118023400-118030400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:118023800-118026600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:118023800-118030200	Weak transcription	HSMMtube	muscle
11	chr10:118024400-118028000	Strong transcription	HSMM	muscle
12	chr10:118025000-118028000	Strong transcription	Fetal Muscle Trunk	muscle
13	chr10:118026200-118027400	Strong transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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