Variant report

Variant	rs10887850
Chromosome Location	chr10:90490627-90490628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11202826	0.91[ASN][1000 genomes]
rs12267931	0.81[ASN][1000 genomes]
rs1228187	0.81[JPT][hapmap]
rs12570840	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12571514	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12765161	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1653834	0.80[ASN][1000 genomes]
rs1653835	0.80[ASN][1000 genomes]
rs1769695	0.80[ASN][1000 genomes]
rs1769696	0.80[ASN][1000 genomes]
rs1769698	0.80[ASN][1000 genomes]
rs1769699	0.80[ASN][1000 genomes]
rs1769701	0.80[ASN][1000 genomes]
rs192767	0.82[ASN][1000 genomes]
rs2053006	0.80[ASN][1000 genomes]
rs2790702	0.80[ASN][1000 genomes]
rs303459	0.86[JPT][hapmap]
rs303460	0.86[JPT][hapmap]
rs381963	0.80[ASN][1000 genomes]
rs3858282	0.82[JPT][hapmap]
rs390400	0.84[ASN][1000 genomes]
rs391260	0.80[ASN][1000 genomes]
rs392430	0.84[ASN][1000 genomes]
rs395231	0.80[ASN][1000 genomes]
rs403572	0.80[ASN][1000 genomes]
rs405147	0.80[ASN][1000 genomes]
rs405635	0.84[ASN][1000 genomes]
rs405854	0.80[ASN][1000 genomes]
rs406671	0.80[ASN][1000 genomes]
rs409079	0.80[ASN][1000 genomes]
rs410725	0.82[ASN][1000 genomes]
rs412227	0.84[ASN][1000 genomes]
rs419014	0.80[ASN][1000 genomes]
rs419049	0.81[ASN][1000 genomes]
rs434028	0.80[ASN][1000 genomes]
rs435159	0.80[ASN][1000 genomes]
rs436861	0.84[ASN][1000 genomes]
rs438177	0.83[ASN][1000 genomes]
rs440103	0.80[ASN][1000 genomes]
rs442466	0.80[ASN][1000 genomes]
rs443886	0.80[ASN][1000 genomes]
rs444764	0.80[ASN][1000 genomes]
rs447651	0.80[ASN][1000 genomes]
rs61853999	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7913071	0.80[JPT][hapmap]
rs814620	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831941	chr10:90410488-90587332	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
6	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
7	nsv1043015	chr10:90467067-90593692	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
8	nsv467415	chr10:90478483-90600865	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
9	nsv551840	chr10:90478483-90600865	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10887850	PAPSS2	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90486200-90490800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr10:90488400-90490800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:90489800-90490800	Weak transcription	Fetal Lung	lung
4	chr10:90490400-90490800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:90490400-90491400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:90490600-90491400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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