Variant report

Variant	rs12267931
Chromosome Location	chr10:90466296-90466297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10887850	0.81[ASN][1000 genomes]
rs11202826	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61853999	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831941	chr10:90410488-90587332	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
6	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90463200-90468800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:90463400-90466600	Weak transcription	HSMM	muscle
3	chr10:90463400-90466600	Weak transcription	Osteobl	bone
4	chr10:90463400-90467200	Weak transcription	Stomach Mucosa	stomach
5	chr10:90463600-90466400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:90464200-90466600	Weak transcription	Fetal Lung	lung
7	chr10:90464200-90466600	Weak transcription	A549	lung
8	chr10:90465000-90468000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:90465000-90468000	Enhancers	HMEC	breast
10	chr10:90465400-90468000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:90465600-90468000	Enhancers	NHEK	skin
12	chr10:90465600-90469000	Enhancers	Hela-S3	cervix
13	chr10:90466000-90467000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:90466000-90468400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr10:90466200-90467000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:90466200-90467600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:90466200-90468000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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