Variant report

Variant	rs10887920
Chromosome Location	chr10:90924415-90924416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10430718	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10509567	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10788635	1.00[ASN][1000 genomes]
rs10887921	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887922	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887923	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887924	0.96[ASN][1000 genomes]
rs10887925	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887926	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887927	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10887928	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10887929	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887932	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11203009	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11203011	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11203014	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11203017	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11203018	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11203024	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11203025	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11203030	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11203031	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11203032	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11203033	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12217507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12219735	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12244855	1.00[YRI][hapmap]
rs12250945	0.96[ASN][1000 genomes]
rs17117088	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17117124	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17117126	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1977501	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2154255	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2211599	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2863216	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2902445	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3802657	0.81[AMR][1000 genomes]
rs3802658	1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3923282	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4078488	0.89[AMR][1000 genomes]
rs4294494	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4399251	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4417181	0.92[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4511206	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4617498	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4933494	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61853069	0.96[ASN][1000 genomes]
rs61853072	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7074977	0.96[ASN][1000 genomes]
rs7076185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098394	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7477966	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7896174	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7902290	0.96[ASN][1000 genomes]
rs9651424	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9651495	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv551845	chr10:90919135-90964026	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90919400-90925800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:90919600-90931400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:90923000-90925200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:90923600-90924800	Weak transcription	Esophagus	oesophagus
5	chr10:90923800-90924600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr10:90923800-90925000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:90923800-90925400	Weak transcription	NHEK	skin
8	chr10:90923800-90932000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:90924000-90924600	Enhancers	Primary B cells from cord blood	blood
10	chr10:90924000-90924800	Enhancers	Primary T cells from cord blood	blood
11	chr10:90924000-90924800	Enhancers	Primary hematopoietic stem cells	blood
12	chr10:90924000-90924800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:90924000-90924800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:90924000-90925000	Enhancers	Fetal Thymus	thymus
15	chr10:90924000-90925400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:90924000-90931400	Weak transcription	HMEC	breast
17	chr10:90924000-90931800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:90924000-90931800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:90924200-90924600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr10:90924200-90924600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr10:90924200-90924600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr10:90924200-90925000	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr10:90924200-90925400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:90924200-90927200	Weak transcription	Adipose Nuclei	Adipose
25	chr10:90924200-90931600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:90924400-90925000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:90924400-90925400	Enhancers	GM12878-XiMat	blood
28	chr10:90924400-90927000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:90924400-90929200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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