Variant report

Variant	rs61853069
Chromosome Location	chr10:90935641-90935642
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10430718	1.00[ASN][1000 genomes]
rs10788635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887920	0.96[ASN][1000 genomes]
rs10887921	0.96[ASN][1000 genomes]
rs10887922	1.00[ASN][1000 genomes]
rs10887923	1.00[ASN][1000 genomes]
rs10887924	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887925	1.00[ASN][1000 genomes]
rs10887926	1.00[ASN][1000 genomes]
rs10887929	1.00[ASN][1000 genomes]
rs10887932	0.83[ASN][1000 genomes]
rs11203006	0.80[EUR][1000 genomes]
rs11203009	0.93[ASN][1000 genomes]
rs11203011	1.00[ASN][1000 genomes]
rs11203014	0.97[ASN][1000 genomes]
rs11203017	1.00[ASN][1000 genomes]
rs11203018	1.00[ASN][1000 genomes]
rs11203024	0.98[ASN][1000 genomes]
rs11203025	0.98[ASN][1000 genomes]
rs11203030	0.83[ASN][1000 genomes]
rs11203031	0.82[ASN][1000 genomes]
rs11203032	0.83[ASN][1000 genomes]
rs11203033	0.83[ASN][1000 genomes]
rs12217507	0.93[ASN][1000 genomes]
rs12219735	0.93[ASN][1000 genomes]
rs12250945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17117088	0.82[ASN][1000 genomes]
rs17117124	0.80[ASN][1000 genomes]
rs17117126	0.83[ASN][1000 genomes]
rs2211599	0.98[ASN][1000 genomes]
rs2902445	1.00[ASN][1000 genomes]
rs3802658	0.81[ASN][1000 genomes]
rs4078488	0.82[ASN][1000 genomes]
rs4269843	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4282908	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4417181	0.83[ASN][1000 genomes]
rs4933494	0.90[ASN][1000 genomes]
rs61853072	0.85[ASN][1000 genomes]
rs6586173	0.80[EUR][1000 genomes]
rs7074977	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076185	0.96[ASN][1000 genomes]
rs7098394	0.85[ASN][1000 genomes]
rs7477966	0.93[ASN][1000 genomes]
rs7896174	0.95[ASN][1000 genomes]
rs7902290	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9651424	1.00[ASN][1000 genomes]
rs9651495	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831944	chr10:90822654-90967018	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	esv2758235	chr10:90835064-91017486	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759775	chr10:90835064-91017486	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv895881	chr10:90842431-90940003	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv551845	chr10:90919135-90964026	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv517170	chr10:90931602-90975207	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv551846	chr10:90932935-90964026	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90935400-90936200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:90935400-90936200	Enhancers	NHDF-Ad	bronchial
3	chr10:90935600-90936400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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