Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:150158453..150162673-chr1:150163333..150168341,4	K562	blood:
2	chr1:149857369..149865402-chr1:150155748..150164645,14	K562	blood:
3	chr1:150163123..150164884-chr1:150179840..150181574,2	K562	blood:
4	chr1:150159275..150161312-chr1:150162457..150164642,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10888575	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10888576	0.81[EUR][1000 genomes]
rs11205339	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11205340	0.84[ASN][1000 genomes]
rs11205347	0.81[EUR][1000 genomes]
rs11811787	0.81[EUR][1000 genomes]
rs12131063	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12133235	0.84[ASN][1000 genomes]
rs12133238	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12569047	0.81[EUR][1000 genomes]
rs1535873	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3118124	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3121000	0.81[ASN][1000 genomes]
rs3121001	0.84[ASN][1000 genomes]
rs4408187	0.84[ASN][1000 genomes]
rs55647200	0.81[EUR][1000 genomes]
rs55956539	0.81[EUR][1000 genomes]
rs59507173	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6660127	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6665499	0.81[ASN][1000 genomes]
rs6680040	0.82[ASN][1000 genomes]
rs6682434	0.82[ASN][1000 genomes]
rs6692738	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6703332	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7535712	0.81[EUR][1000 genomes]
rs7550600	0.89[EUR][1000 genomes]
rs7551023	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv535153	chr1:150147218-150168829	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150159600-150164200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:150159600-150164400	Weak transcription	NHLF	lung
3	chr1:150160200-150164200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr1:150160200-150164200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:150160200-150164200	Weak transcription	NHDF-Ad	bronchial
6	chr1:150160200-150164400	Weak transcription	Hela-S3	cervix
7	chr1:150160200-150166600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:150160400-150164200	Weak transcription	Osteobl	bone
9	chr1:150160400-150164400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:150160400-150164600	Weak transcription	A549	lung
11	chr1:150160600-150164200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:150160600-150164200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:150163600-150164200	Weak transcription	HSMMtube	muscle
14	chr1:150163800-150164200	Enhancers	Fetal Heart	heart
15	chr1:150163800-150164200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:150164000-150165200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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