Variant report

Variant	rs11205340
Chromosome Location	chr1:150170612-150170613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10788872	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10888574	0.84[ASN][1000 genomes]
rs10888575	0.99[ASN][1000 genomes]
rs10888576	0.94[ASN][1000 genomes]
rs11205339	0.99[ASN][1000 genomes]
rs11205343	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11205347	0.91[ASN][1000 genomes]
rs11205348	0.89[ASN][1000 genomes]
rs11811787	0.94[ASN][1000 genomes]
rs12131063	0.99[ASN][1000 genomes]
rs12133235	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12133238	0.99[ASN][1000 genomes]
rs12569047	0.88[ASN][1000 genomes]
rs1535873	0.99[ASN][1000 genomes]
rs1924549	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2038752	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2038753	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3118124	0.99[ASN][1000 genomes]
rs3121000	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3121001	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4408187	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55647200	0.94[ASN][1000 genomes]
rs55956539	0.94[ASN][1000 genomes]
rs59507173	0.99[ASN][1000 genomes]
rs61161619	0.90[ASN][1000 genomes]
rs6587753	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6655935	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6660127	0.99[ASN][1000 genomes]
rs6665499	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6680040	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6682434	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6692738	0.99[ASN][1000 genomes]
rs6694215	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6703332	0.98[ASN][1000 genomes]
rs7522034	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7532164	0.94[ASN][1000 genomes]
rs7548543	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7551023	0.99[ASN][1000 genomes]
rs7555995	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150167400-150171200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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