Variant report

Variant	rs11205343
Chromosome Location	chr1:150195961-150195962
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:149857654..149859666-chr1:150195110..150196714,2	K562	blood:
2	chr1:150195667..150197208-chr1:150207119..150208777,2	K562	blood:

Variant related genes	Relation type
ENSG00000184260	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000143401	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10788872	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10888575	0.94[ASN][1000 genomes]
rs10888576	0.95[ASN][1000 genomes]
rs11205339	0.94[ASN][1000 genomes]
rs11205340	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11205347	0.92[ASN][1000 genomes]
rs11205348	0.90[ASN][1000 genomes]
rs11811787	0.96[ASN][1000 genomes]
rs12057558	0.84[EUR][1000 genomes]
rs12131063	0.94[ASN][1000 genomes]
rs12133235	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12133238	0.94[ASN][1000 genomes]
rs12569047	0.90[ASN][1000 genomes]
rs1535873	0.94[ASN][1000 genomes]
rs1924549	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2038752	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2038753	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3118124	0.94[ASN][1000 genomes]
rs3121000	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3121001	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35938158	0.83[EUR][1000 genomes]
rs4408187	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55647200	0.95[ASN][1000 genomes]
rs55956539	0.95[ASN][1000 genomes]
rs59507173	0.94[ASN][1000 genomes]
rs61161619	0.91[ASN][1000 genomes]
rs6587753	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6655935	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6660127	0.94[ASN][1000 genomes]
rs6665499	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6680040	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6682434	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6692738	0.94[ASN][1000 genomes]
rs6694215	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6703332	0.92[ASN][1000 genomes]
rs7522034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7532164	0.94[ASN][1000 genomes]
rs7548543	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7551023	0.94[ASN][1000 genomes]
rs7555995	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv916014	chr1:150187139-150537483	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150184200-150206600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:150186200-150196400	Weak transcription	HepG2	liver
3	chr1:150186200-150206800	Weak transcription	Spleen	Spleen
4	chr1:150186400-150196400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:150186400-150206000	Weak transcription	Colonic Mucosa	Colon
6	chr1:150186400-150206800	Weak transcription	Esophagus	oesophagus
7	chr1:150186600-150196600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:150186600-150196600	Weak transcription	Ovary	ovary
9	chr1:150186600-150196800	Weak transcription	Fetal Brain Female	brain
10	chr1:150186600-150197000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr1:150186600-150197200	Weak transcription	NHLF	lung
12	chr1:150186600-150205200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:150186600-150205800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:150186600-150205800	Weak transcription	Right Atrium	heart
15	chr1:150186600-150206000	Weak transcription	Fetal Brain Male	brain
16	chr1:150186600-150206200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr1:150186600-150206200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr1:150186600-150206400	Weak transcription	Aorta	Aorta
19	chr1:150186800-150196400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr1:150186800-150196400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr1:150186800-150196400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr1:150186800-150196400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr1:150186800-150196600	Weak transcription	Brain Hippocampus Middle	brain
24	chr1:150186800-150196600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:150186800-150196600	Weak transcription	Right Ventricle	heart
26	chr1:150186800-150196800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:150186800-150196800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:150186800-150196800	Weak transcription	HSMMtube	muscle
29	chr1:150186800-150197000	Weak transcription	Colon Smooth Muscle	Colon
30	chr1:150186800-150197000	Weak transcription	Fetal Kidney	kidney
31	chr1:150186800-150197000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr1:150186800-150197200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr1:150186800-150197200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:150186800-150197200	Weak transcription	Brain Angular Gyrus	brain
35	chr1:150186800-150197200	Weak transcription	Fetal Heart	heart
36	chr1:150186800-150197400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr1:150186800-150198400	Weak transcription	Psoas Muscle	Psoas
38	chr1:150186800-150198800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr1:150186800-150205800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr1:150186800-150205800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr1:150186800-150205800	Weak transcription	Brain Germinal Matrix	brain
42	chr1:150186800-150205800	Weak transcription	Brain Substantia Nigra	brain
43	chr1:150186800-150206800	Weak transcription	Pancreas	Pancrea
44	chr1:150187000-150196200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr1:150189000-150204600	Strong transcription	Dnd41	blood
46	chr1:150190000-150201200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:150190800-150197200	Weak transcription	Lung	lung
48	chr1:150190800-150204400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr1:150190800-150204400	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr1:150190800-150204400	Strong transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links