The 2.0 version of rSNPBase

Variant report

Variant rs10888981
Chromosome Location chr1:57037830-57037831
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:57016000-57038600 Weak transcription HSMMtube muscle
2 chr1:57017400-57039400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr1:57017800-57040800 Enhancers Cortex derived primary cultured neurospheres brain
4 chr1:57025600-57040000 Weak transcription Fetal Muscle Trunk muscle
5 chr1:57029400-57042200 Weak transcription Thymus Thymus
6 chr1:57032000-57038800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr1:57032200-57038000 Weak transcription Primary neutrophils fromperipheralblood blood
8 chr1:57032200-57040600 Weak transcription HSMM muscle
9 chr1:57032400-57042400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr1:57032800-57038200 Weak transcription Osteobl bone
11 chr1:57032800-57039200 Weak transcription Small Intestine intestine
12 chr1:57032800-57041000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr1:57033000-57038200 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr1:57033000-57038800 Weak transcription Fetal Brain Male brain
15 chr1:57033800-57039800 Enhancers iPS-18 Cell Line embryonic stem cell
16 chr1:57034200-57038200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr1:57035200-57039600 Enhancers ES-I3 Cell Line embryonic stem cell
18 chr1:57035200-57039600 Enhancers HUES6 Cell Line embryonic stem cell
19 chr1:57035200-57039600 Enhancers Fetal Intestine Large intestine
20 chr1:57035200-57041400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
21 chr1:57035400-57038000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr1:57035400-57038200 Genic enhancers Muscle Satellite Cultured Cells --
23 chr1:57035400-57039400 Enhancers Brain Substantia Nigra brain
24 chr1:57035400-57039400 Enhancers Stomach Mucosa stomach
25 chr1:57035400-57039600 Transcr. at gene 5' and 3' NHDF-Ad bronchial
26 chr1:57035400-57039800 Enhancers Brain Angular Gyrus brain
27 chr1:57035600-57038800 Enhancers Adipose Nuclei Adipose
28 chr1:57035600-57038800 Enhancers HepG2 liver
29 chr1:57035800-57038200 Weak transcription Duodenum Mucosa Duodenum
30 chr1:57035800-57038600 Weak transcription Aorta Aorta
31 chr1:57035800-57039000 Enhancers A549 lung
32 chr1:57035800-57039800 Weak transcription Lung lung
33 chr1:57036400-57038200 Enhancers Fetal Muscle Leg muscle
34 chr1:57036400-57040800 Enhancers H1 Cell Line embryonic stem cell
35 chr1:57036600-57038000 Enhancers Fetal Adrenal Gland Adrenal Gland
36 chr1:57036600-57038400 Enhancers Brain Hippocampus Middle brain
37 chr1:57036600-57039000 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
38 chr1:57036600-57039000 Genic enhancers NHLF lung
39 chr1:57036600-57039400 Enhancers Placenta Placenta
40 chr1:57036600-57039600 Transcr. at gene 5' and 3' Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:57036600-57039800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr1:57036600-57040600 Enhancers Brain Cingulate Gyrus brain
43 chr1:57036600-57040600 Enhancers Placenta Amnion Placenta Amnion
44 chr1:57036800-57038200 Enhancers Colon Smooth Muscle Colon
45 chr1:57036800-57038200 Enhancers Esophagus oesophagus
46 chr1:57036800-57038200 Enhancers Left Ventricle heart
47 chr1:57036800-57038200 Enhancers Pancreas Pancrea
48 chr1:57036800-57038400 Enhancers Psoas Muscle Psoas
49 chr1:57036800-57038800 Enhancers Ovary ovary
50 chr1:57036800-57039000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015