Variant report
| Variant | rs72666448 |
|---|---|
| Chromosome Location | chr1:57085577-57085578 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10888981 | 0.85[EUR][1000 genomes] |
| rs1418521 | 0.89[EUR][1000 genomes] |
| rs17114100 | 0.89[EUR][1000 genomes] |
| rs17114110 | 0.89[EUR][1000 genomes] |
| rs17114113 | 0.89[EUR][1000 genomes] |
| rs17114126 | 0.89[EUR][1000 genomes] |
| rs17114127 | 0.89[EUR][1000 genomes] |
| rs17114133 | 0.84[EUR][1000 genomes] |
| rs55927525 | 0.89[EUR][1000 genomes] |
| rs58146416 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs59475580 | 0.89[EUR][1000 genomes] |
| rs72664369 | 0.89[EUR][1000 genomes] |
| rs72664380 | 0.89[EUR][1000 genomes] |
| rs72664390 | 0.89[EUR][1000 genomes] |
| rs72664391 | 0.89[EUR][1000 genomes] |
| rs72664392 | 0.89[EUR][1000 genomes] |
| rs72664395 | 0.89[EUR][1000 genomes] |
| rs72666445 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72666450 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72666481 | 0.89[EUR][1000 genomes] |
| rs72666484 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72666485 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72666490 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72666498 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72668305 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72668306 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869295 | chr1:56894955-57656562 | Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv2762142 | chr1:57082459-57094901 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv945967 | chr1:57084318-57086467 | Weak transcription Enhancers | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:57083200-57091600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr1:57085400-57085800 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
