Variant report

Variant	rs10890470
Chromosome Location	chr1:47630925-47630926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10789500	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10789501	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10789503	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10890460	0.81[EUR][1000 genomes]
rs10890464	0.81[EUR][1000 genomes]
rs10890465	0.81[EUR][1000 genomes]
rs10890466	0.82[EUR][1000 genomes]
rs10890467	0.82[EUR][1000 genomes]
rs10890468	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1110425	0.80[EUR][1000 genomes]
rs11211450	0.81[EUR][1000 genomes]
rs11211463	0.85[EUR][1000 genomes]
rs11211464	0.84[EUR][1000 genomes]
rs11211471	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11211472	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11211475	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12042073	0.82[EUR][1000 genomes]
rs12046348	0.82[EUR][1000 genomes]
rs12046525	0.86[EUR][1000 genomes]
rs12124648	0.82[EUR][1000 genomes]
rs12734327	0.81[EUR][1000 genomes]
rs1847222	0.81[EUR][1000 genomes]
rs1847223	0.81[EUR][1000 genomes]
rs1847224	0.81[EUR][1000 genomes]
rs1967756	0.81[EUR][1000 genomes]
rs1967757	0.81[EUR][1000 genomes]
rs2208772	0.81[EUR][1000 genomes]
rs2224622	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2742079	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2798352	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2798356	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2821082	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28462300	0.81[EUR][1000 genomes]
rs28796303	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3850876	0.82[EUR][1000 genomes]
rs4314923	0.80[EUR][1000 genomes]
rs4926785	0.80[EUR][1000 genomes]
rs4926793	0.80[EUR][1000 genomes]
rs4926797	0.80[EUR][1000 genomes]
rs4926804	0.80[EUR][1000 genomes]
rs4926826	0.81[EUR][1000 genomes]
rs4926869	0.80[EUR][1000 genomes]
rs4926918	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6664392	0.81[EUR][1000 genomes]
rs6664496	0.81[EUR][1000 genomes]
rs6675902	0.80[EUR][1000 genomes]
rs6690005	0.80[EUR][1000 genomes]
rs6693145	0.80[EUR][1000 genomes]
rs6701611	0.80[EUR][1000 genomes]
rs72892699	0.82[ASN][1000 genomes]
rs7519903	0.80[EUR][1000 genomes]
rs7522639	0.80[EUR][1000 genomes]
rs7526674	0.81[EUR][1000 genomes]
rs7540264	0.80[EUR][1000 genomes]
rs760440	0.90[EUR][1000 genomes]
rs760441	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs760442	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs911903	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs911909	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9633421	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916813	chr1:47435635-47666179	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv871010	chr1:47533705-47637999	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv870899	chr1:47548974-47637999	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47596400-47641000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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