Variant report

Variant	rs11211475
Chromosome Location	chr1:47637659-47637660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10789500	0.81[EUR][1000 genomes]
rs10789501	0.87[EUR][1000 genomes]
rs10789503	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10890468	0.81[EUR][1000 genomes]
rs10890470	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11211464	0.84[EUR][1000 genomes]
rs11211471	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11211472	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1967756	0.80[EUR][1000 genomes]
rs2208772	0.81[EUR][1000 genomes]
rs2224622	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2742079	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2798352	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2798356	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2821082	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28796303	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3850876	0.81[EUR][1000 genomes]
rs4926918	0.85[EUR][1000 genomes]
rs760440	0.84[EUR][1000 genomes]
rs760441	0.90[EUR][1000 genomes]
rs760442	0.87[EUR][1000 genomes]
rs911903	0.90[EUR][1000 genomes]
rs911909	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916813	chr1:47435635-47666179	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv871010	chr1:47533705-47637999	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv870899	chr1:47548974-47637999	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47596400-47641000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links