Variant report

Variant	rs10892556
Chromosome Location	chr11:120131591-120131592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10892555	0.84[ASN][1000 genomes]
rs11217777	1.00[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12226448	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17123747	1.00[EUR][1000 genomes]
rs17123753	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2715882	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120127000-120132000	Weak transcription	Brain Germinal Matrix	brain
2	chr11:120127600-120132400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:120127800-120132400	Weak transcription	Right Atrium	heart
4	chr11:120129400-120132800	Enhancers	Placenta	Placenta
5	chr11:120130600-120131600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:120130600-120131600	Enhancers	Esophagus	oesophagus
7	chr11:120130800-120132200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:120131000-120131600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:120131000-120131800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:120131200-120132200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:120131200-120132400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr11:120131200-120133000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:120131400-120131800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:120131400-120131800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:120131400-120131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:120131400-120132000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:120131400-120132600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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