Variant report

Variant	rs11217777
Chromosome Location	chr11:120129533-120129534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120116039..120118601-chr11:120127527..120129964,2	MCF-7	breast:
2	chr11:120119358..120123435-chr11:120128826..120131276,3	K562	blood:
3	chr11:120129227..120130037-chr11:120170286..120170874,2	MCF-7	breast:
4	chr11:120111344..120113154-chr11:120129036..120131490,2	K562	blood:
5	chr11:120085109..120087647-chr11:120129498..120132466,2	K562	blood:
6	chr11:120124199..120127517-chr11:120128190..120131008,4	K562	blood:
7	chr11:120054557..120056191-chr11:120128819..120131080,2	K562	blood:
8	chr11:120111222..120113154-chr11:120128592..120130536,2	K562	blood:
9	chr11:120106000..120109277-chr11:120123883..120131527,10	K562	blood:
10	chr11:120106435..120109389-chr11:120127787..120129611,4	K562	blood:
11	chr11:120126928..120129765-chr11:120172517..120174089,2	MCF-7	breast:
12	chr11:120128846..120129977-chr11:120173377..120174320,3	K562	blood:
13	chr11:120119508..120122030-chr11:120129146..120131276,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10892555	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10892556	1.00[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12226448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17123753	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2715882	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv428581	chr11:120006048-120167603	Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120127000-120131000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:120127000-120132000	Weak transcription	Brain Germinal Matrix	brain
3	chr11:120127400-120130600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:120127600-120132400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:120127800-120132400	Weak transcription	Right Atrium	heart
6	chr11:120128400-120130200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:120128400-120131400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:120129400-120132800	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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