Variant report

Variant	rs10892588
Chromosome Location	chr11:120488347-120488348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120486491..120489401-chr11:120490672..120493068,2	K562	blood:

Variant related genes	Relation type
ENSG00000255006	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10790388	0.92[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11600274	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11600354	0.91[EUR][1000 genomes]
rs11600894	0.92[EUR][1000 genomes]
rs11601552	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11602011	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11603831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11604139	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11605735	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12278532	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12278678	0.92[EUR][1000 genomes]
rs12281635	0.80[EUR][1000 genomes]
rs12286173	0.97[EUR][1000 genomes]
rs12807172	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs34759019	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34884722	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245039	0.97[ASN][1000 genomes]
rs4331108	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4367952	0.97[ASN][1000 genomes]
rs4445643	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs4565903	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs4611216	0.87[ASN][1000 genomes]
rs4631889	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs4936522	0.82[ASN][1000 genomes]
rs4936523	0.82[ASN][1000 genomes]
rs4936525	0.82[ASN][1000 genomes]
rs4936529	0.88[ASN][1000 genomes]
rs6589819	0.98[ASN][1000 genomes]
rs6589820	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs6589821	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7101412	0.97[ASN][1000 genomes]
rs7111020	0.92[CEU][hapmap];0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7127199	0.91[CHB][hapmap];0.80[JPT][hapmap];0.87[ASN][1000 genomes]
rs7924856	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs7928043	0.83[ASN][1000 genomes]
rs7934084	0.98[ASN][1000 genomes]
rs7947677	0.98[ASN][1000 genomes]
rs7949316	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs7952478	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1036102	chr11:120442895-120498908	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv975985	chr11:120487581-120492232	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120480200-120489000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:120484800-120507400	Weak transcription	Right Atrium	heart
3	chr11:120485000-120489200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:120485400-120498200	Weak transcription	Ovary	ovary

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